RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GPX1P07203 203 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 FAM162BQ5T6X4 162 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 TMEM88Q6PEY1 159 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 Q6ZQT7 251 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 FAM231DQ6ZW35 169 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 TRPT1Q86TN4 253 aaKnown RBP9.23□□□□□ -0.93
UPF1-208ENST00000600012 STHQ8IWL8 128 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 C15orf54Q8N8G6 183 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 ANAPC16Q96DE5 110 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 DAZAP1Q96EP5 407 aaKnown RBP9.23□□□□□ -0.93
UPF1-208ENST00000600012 V9GYV3 84 aa9.23□□□□□ -0.93
UPF1-208ENST00000600012 TRAV12-2A0A075B6T6 113 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 TRBV7-9A0A0J9YWB2 115 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 ZNF705GA8MUZ8 300 aaPredicted RBP9.22□□□□□ -0.93
UPF1-208ENST00000600012 KLLNB2CW77 178 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 UBE2CO00762 179 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 SPRY2O43597 315 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 CA1P00915 261 aaPredicted RBP9.22□□□□□ -0.93
UPF1-208ENST00000600012 P01737 135 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 RNASE4P34096 147 aaKnown RBP9.22□□□□□ -0.93
UPF1-208ENST00000600012 RPL19P84098 196 aaKnown RBP9.22□□□□□ -0.93
UPF1-208ENST00000600012 CEMP1Q6PRD7 247 aaPredicted RBP9.22□□□□□ -0.93
UPF1-208ENST00000600012 CTDSP1Q9GZU7 261 aa9.22□□□□□ -0.93
UPF1-208ENST00000600012 TMSB15BA0A087X1C1 80 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 KIR2DL5BA0A0G2JN68 375 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 KIR2DL5BA0A0G2JPC4 375 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 PPP1R2P9O14990 202 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 RPL35AP18077 110 aaKnown RBP9.21□□□□□ -0.94
UPF1-208ENST00000600012 CDKN1BP46527 198 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 DEFB135Q30KP9 77 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 GFI1BQ5VTD9 330 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 KIR2DL5AQ8N109 375 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 KIR2DL5BQ8NHK3 375 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 RPP21Q9H633 154 aaKnown RBP9.21□□□□□ -0.94
UPF1-208ENST00000600012 C11orf21Q9P2W6 132 aa9.21□□□□□ -0.94
UPF1-208ENST00000600012 KLK5Q9Y337 293 aaPredicted RBP9.21□□□□□ -0.94
UPF1-208ENST00000600012 C7orf71A4D174 169 aa9.2□□□□□ -0.94
UPF1-208ENST00000600012 FABP5P3A8MUU1 101 aa9.2□□□□□ -0.94
UPF1-208ENST00000600012 PFN1P07737 140 aaKnown RBP9.2□□□□□ -0.94
UPF1-208ENST00000600012 TSPOP30536 169 aa9.2□□□□□ -0.94
UPF1-208ENST00000600012 OR2D3Q8NGH3 330 aa9.2□□□□□ -0.94
UPF1-208ENST00000600012 TRAV12-3A0A0B4J271 114 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 TRAV21A0A0B4J279 112 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 TMEM189A5PLL7 270 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 CRXO43186 299 aaPredicted RBP9.19□□□□□ -0.94
UPF1-208ENST00000600012 ORM1P02763 201 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 GZMBP10144 247 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 TCL1AP56279 114 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 Q6AWC8 147 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 RNF183Q96D59 192 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 CLUHP3Q96NS8 147 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 SMCO4Q9NRQ5 59 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 IL36BQ9NZH7 164 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 NAGKQ9UJ70 344 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 URGCP-MRPS24S4R325 110 aa9.19□□□□□ -0.94
UPF1-208ENST00000600012 IGKV3D-20A0A0C4DH25 116 aa9.18□□□□□ -0.94
UPF1-208ENST00000600012 RBMY1A1P0DJD3 496 aaKnown RBP9.18□□□□□ -0.94
UPF1-208ENST00000600012 RBMY1CP0DJD4 496 aa9.18□□□□□ -0.94
UPF1-208ENST00000600012 RBMY1FQ15415 496 aaKnown RBP9.18□□□□□ -0.94
UPF1-208ENST00000600012 MUC21Q5SSG8 566 aa9.18□□□□□ -0.94
UPF1-208ENST00000600012 TMEM242Q9NWH2 141 aa9.18□□□□□ -0.94
UPF1-208ENST00000600012 GRIFINA4D1Z8 144 aa9.17□□□□□ -0.94
UPF1-208ENST00000600012 FAM3BP58499 235 aaPredicted RBP9.17□□□□□ -0.94
UPF1-208ENST00000600012 LINC01559Q495D7 138 aa9.17□□□□□ -0.94
UPF1-208ENST00000600012 CT83Q5H943 113 aa9.17□□□□□ -0.94
UPF1-208ENST00000600012 XCL2Q9UBD3 114 aa9.17□□□□□ -0.94
UPF1-208ENST00000600012 ZNF324O75467 553 aaPredicted RBP9.16□□□□□ -0.94
UPF1-208ENST00000600012 INSP01308 110 aa9.16□□□□□ -0.94
UPF1-208ENST00000600012 ANXA2RQ3ZCQ2 193 aa9.16□□□□□ -0.94
UPF1-208ENST00000600012 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.16□□□□□ -0.94
UPF1-208ENST00000600012 TSKUQ8WUA8 353 aa9.16□□□□□ -0.94
UPF1-208ENST00000600012 NEU1Q99519 415 aa9.16□□□□□ -0.94
UPF1-208ENST00000600012 A0A1W2PPQ1 181 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 SMIM27A0A1W2PRY6 76 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 A8MWL6 223 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 AMBPP02760 352 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 CXCL1P09341 107 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 GIG44P09565 113 aaPredicted RBP9.15□□□□□ -0.94
UPF1-208ENST00000600012 S100PP25815 95 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 RPS20P60866 119 aaKnown RBP9.15□□□□□ -0.94
UPF1-208ENST00000600012 NUTF2P61970 127 aaKnown RBP9.15□□□□□ -0.94
UPF1-208ENST00000600012 ELOBQ15370 118 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 LGALS9CQ6DKI2 356 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 KCNIP4Q6PIL6 250 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 ZNF575Q86XF7 245 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 PHLDA1Q8WV24 401 aaPredicted RBP9.15□□□□□ -0.94
UPF1-208ENST00000600012 GTSF1Q8WW33 167 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 YPEL4Q96NS1 127 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 FRAS1Q86XX4 4008 aa9.15□□□□□ -0.94
UPF1-208ENST00000600012 KMT2AQ03164 3969 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 TGIF2-C20orf24A0A0A6YYL0 155 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 SPINK4O60575 86 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 MORN3Q6PF18 240 aaPredicted RBP9.14□□□□□ -0.95
UPF1-208ENST00000600012 PGLYRP4Q96LB8 373 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 IMMP2LQ96T52 175 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 TPPP3Q9BW30 176 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 KRTAP17-1Q9BYP8 105 aa9.14□□□□□ -0.95
UPF1-208ENST00000600012 IGHV1OR15-1A0A075B7D0 117 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 XKRY2A2RUG3 117 aa9.13□□□□□ -0.95
UPF1-208ENST00000600012 HIGD1CA8MV81 97 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms