RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 MDFICQ9P1T7 246 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 ARL2-SNX15V9GYD0 113 aa9.73□□□□□ -0.85
UPF1-205ENST00000598209 A0A1B0GVG6 124 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 PAGE4O60829 102 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 GCGP01275 180 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 OR5I1Q13606 314 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 LGALS9BQ3B8N2 356 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 ZFP69Q49AA0 526 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 SLC51BQ86UW2 128 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 C18orf15Q96N68 181 aa9.72□□□□□ -0.85
UPF1-205ENST00000598209 NACAE9PAV3 2078 aa9.71□□□□□ -0.85
UPF1-205ENST00000598209 DNAH6Q9C0G6 4158 aa9.71□□□□□ -0.85
UPF1-205ENST00000598209 GNRH2O43555 120 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 TYMSP04818 313 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 HOXA5P20719 270 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 RAB5CP51148 216 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 Q86TA4 180 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 C9orf62Q8N4C0 152 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 POM121L12Q8N7R1 296 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 KCNS1Q96KK3 526 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 TCEAL7Q9BRU2 100 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 SDF2L1Q9HCN8 221 aa9.71□□□□□ -0.86
UPF1-205ENST00000598209 TRAV26-1A0A087WT03 109 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 IGHV3-16A0A0C4DH30 117 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 NUDT3O95989 172 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 PFN1P07737 140 aaKnown RBP9.7□□□□□ -0.86
UPF1-205ENST00000598209 SULT1A2P50226 295 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 UBE2DNLQ8IWF7 75 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 SPXQ9BT56 116 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 C11orf21Q9P2W6 132 aa9.7□□□□□ -0.86
UPF1-205ENST00000598209 AKR1C3P42330 323 aa9.69□□□□□ -0.86
UPF1-205ENST00000598209 UBE2G1P62253 170 aa9.69□□□□□ -0.86
UPF1-205ENST00000598209 FMC1Q96HJ9 113 aa9.69□□□□□ -0.86
UPF1-205ENST00000598209 TRAV1-1A0A0B4J248 108 aa9.68□□□□□ -0.86
UPF1-205ENST00000598209 A0A0J9YY99 117 aa9.68□□□□□ -0.86
UPF1-205ENST00000598209 IGHV3-53P01767 116 aa9.68□□□□□ -0.86
UPF1-205ENST00000598209 CCL20P78556 96 aa9.68□□□□□ -0.86
UPF1-205ENST00000598209 ZFP30Q9Y2G7 519 aa9.68□□□□□ -0.86
UPF1-205ENST00000598209 TRBV6-1A0A0K0K1D8 114 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 SCO2A0A1W2PP80 73 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 TEX46H3BTG2 121 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 M0R2P5 195 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 RNF212Q495C1 297 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 RASL10AQ92737 203 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 MANBALQ9NQG1 85 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 GNG13Q9P2W3 67 aa9.67□□□□□ -0.86
UPF1-205ENST00000598209 FABP5P3A8MUU1 101 aa9.66□□□□□ -0.86
UPF1-205ENST00000598209 H3BNG1 76 aa9.66□□□□□ -0.86
UPF1-205ENST00000598209 LTAP01374 205 aa9.66□□□□□ -0.86
UPF1-205ENST00000598209 COX8CQ7Z4L0 72 aa9.66□□□□□ -0.86
UPF1-205ENST00000598209 ZC2HC1AQ96GY0 325 aa9.66□□□□□ -0.86
UPF1-205ENST00000598209 IGKV3D-20A0A0C4DH25 116 aa9.65□□□□□ -0.86
UPF1-205ENST00000598209 S100A9P06702 114 aaKnown RBP9.65□□□□□ -0.86
UPF1-205ENST00000598209 NKX2-5P52952 324 aaPredicted RBP9.65□□□□□ -0.86
UPF1-205ENST00000598209 VSIG2Q96IQ7 327 aa9.65□□□□□ -0.86
UPF1-205ENST00000598209 TRAV4A0A0B4J268 109 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 SH2D1AO60880 128 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 SFTA3P0C7M3 94 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 CRIP1P50238 77 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 FHL2Q14192 279 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 ZNF479Q96JC4 524 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 C9orf85Q96MD7 179 aa9.64□□□□□ -0.87
UPF1-205ENST00000598209 TRGV4A0A0C4DH28 118 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 PAX4O43316 350 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 ORM1P02763 201 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 RNASE3P12724 160 aaKnown RBP9.63□□□□□ -0.87
UPF1-205ENST00000598209 CCL18P55774 89 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 FAM3BP58499 235 aaPredicted RBP9.63□□□□□ -0.87
UPF1-205ENST00000598209 SLAQ13239 276 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 FAM162BQ5T6X4 162 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 NHLRC2Q8NBF2 726 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 PRO0255Q9UI72 69 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 LINC00588Q9Y4M8 146 aa9.63□□□□□ -0.87
UPF1-205ENST00000598209 IGLV2-18A0A075B6J9 118 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 A0A096LPF7 62 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 B4DEV8 164 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 C9JCJ5 164 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 M0R2N4 97 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 IFNA1P01562 189 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 S100A4P26447 101 aaKnown RBP9.62□□□□□ -0.87
UPF1-205ENST00000598209 ASIPP42127 132 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 CRYBA4P53673 196 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 ZNF674Q2M3X9 581 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 ZNF876PQ49A33 203 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 ALKAL2Q6UX46 152 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 OR4C5Q8NGB2 326 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 C11orf52Q96A22 123 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 TXNDC17Q9BRA2 123 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 HHLA3Q9XRX5 114 aa9.62□□□□□ -0.87
UPF1-205ENST00000598209 KRBOX1C9JBD0 128 aa9.61□□□□□ -0.87
UPF1-205ENST00000598209 M0R036 132 aa9.61□□□□□ -0.87
UPF1-205ENST00000598209 BAGE2Q86Y30 109 aa9.61□□□□□ -0.87
UPF1-205ENST00000598209 BOLA1Q9Y3E2 137 aa9.61□□□□□ -0.87
UPF1-205ENST00000598209 ICOSQ9Y6W8 199 aa9.61□□□□□ -0.87
UPF1-205ENST00000598209 PGPEP1LA6NFU8 196 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 BCL2P10415 239 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 RPL35P42766 123 aaKnown RBP9.6□□□□□ -0.87
UPF1-205ENST00000598209 MEF2BQ02080 365 aaPredicted RBP9.6□□□□□ -0.87
UPF1-205ENST00000598209 ESRGQ1W209 222 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 ZNF506Q5JVG8 444 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms