RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 IGLC6P0CF74 106 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 ARL14EPLP0DKL9 152 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 CTLA4P16410 223 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 OR1C1Q15619 314 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 DEFB110Q30KQ9 67 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 KLF17Q5JT82 389 aaPredicted RBP4.48□□□□□ -1.69
SMAD4-208ENST00000589706 SPINK14Q6IE38 97 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 LINC00173Q6ZV60 143 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 C10orf126Q8N4M7 172 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 GATD1Q8NB37 220 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 MAPK1IP1LQ8NDC0 245 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 MDS2Q8NDY4 140 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.48□□□□□ -1.69
SMAD4-208ENST00000589706 ST8SIA1Q92185 356 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 C18orf15Q96N68 181 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 MCRIP2Q9BUT9 160 aaKnown RBP4.48□□□□□ -1.69
SMAD4-208ENST00000589706 KRTAP17-1Q9BYP8 105 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 AICDAQ9GZX7 198 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 CACNG5Q9UF02 275 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 PRNDQ9UKY0 176 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 V9GYY9 64 aa4.48□□□□□ -1.69
SMAD4-208ENST00000589706 TRAV4A0A0B4J268 109 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 IGKV1-9A0A0C4DH69 117 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 SPINK4O60575 86 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 IGLV2-8P01709 118 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 CECR9P0C854 216 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 IAPPP10997 89 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 CRYGAP11844 174 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 COX6A1P12074 109 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 BCL3P20749 454 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 RBM11P57052 281 aaKnown RBP4.47□□□□□ -1.69
SMAD4-208ENST00000589706 TMEM258P61165 79 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 HERVK_113P63121 156 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 GDF5OSQ5U4N7 250 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 ZNF818PQ6ZRF7 136 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 C2orf48Q96LS8 159 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 IGF2BP2-AS1Q96M15 143 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 RNASE7Q9H1E1 156 aaKnown RBP4.47□□□□□ -1.69
SMAD4-208ENST00000589706 FZR1Q9UM11 496 aa4.47□□□□□ -1.69
SMAD4-208ENST00000589706 CHCHD2Q9Y6H1 151 aaPredicted RBP4.47□□□□□ -1.69
SMAD4-208ENST00000589706 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.46□□□□□ -1.694e-10■■■■■ 56.7
SMAD4-208ENST00000589706 MGAM2Q2M2H8 2515 aa4.46□□□□□ -1.69
SMAD4-208ENST00000589706 IGHV1-45A0A0A0MS14 117 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 TINCRA0A1B0GVN0 87 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 NPYP01303 97 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 STATHP02808 62 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 PRSS1P07477 247 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 RPL13AP40429 203 aaKnown RBP4.46□□□□□ -1.7
SMAD4-208ENST00000589706 UBE2D3P61077 147 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 UBE2D2P62837 147 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 PDPNQ86YL7 162 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 Q8N7P7 452 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 WDR31Q8NA23 367 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 LINC01560Q8TB33 94 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 ZNF414Q96IQ9 312 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 HDHD3Q9BSH5 251 aaPredicted RBP4.46□□□□□ -1.7
SMAD4-208ENST00000589706 ZNF492Q9P255 531 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 TCF19Q9Y242 345 aa4.46□□□□□ -1.7
SMAD4-208ENST00000589706 ANK3Q12955 4377 aaKnown RBP4.46□□□□□ -1.7
SMAD4-208ENST00000589706 SVEP1Q4LDE5 3571 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 USF3Q68DE3 2245 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 TRBV25-1A0A075B6N4 114 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 TRBV6-6A0A0A6YYG2 114 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 KRTAP4-8A0A0G2JLE6 195 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 A0A0G2JRQ6 117 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 LOC107984640A0A0U1RRK4 108 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 MYMXA0A1B0GTQ4 84 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 K7ERJ3 54 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 TIMM8AO60220 97 aaPredicted RBP4.45□□□□□ -1.7
SMAD4-208ENST00000589706 ATP5LO75964 103 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 LGALS1P09382 135 aaKnown RBP4.45□□□□□ -1.7
SMAD4-208ENST00000589706 PRDX2P32119 198 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 GNG5P63218 68 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 FXYD3Q14802 87 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 ZNF672Q499Z4 452 aaPredicted RBP4.45□□□□□ -1.7
SMAD4-208ENST00000589706 C6orf226Q5I0X4 101 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 LCE1DQ5T752 114 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 DUX4L9Q6RFH8 374 aaPredicted RBP4.45□□□□□ -1.7
SMAD4-208ENST00000589706 Q6ZVQ6 151 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 SMIM29Q86T20 159 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 RNASE6Q93091 150 aaKnown RBP4.45□□□□□ -1.7
SMAD4-208ENST00000589706 ZNF524Q96C55 264 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 CYYR1Q96J86 154 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 SPACA5Q96QH8 159 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 CCL19Q99731 98 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 CCL28Q9NRJ3 127 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 ABCA1O95477 2261 aa4.45□□□□□ -1.7
SMAD4-208ENST00000589706 NCKAP5O14513 1909 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 IGHV4-4A0A075B6R2 117 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 TRAV2A0A0B4J234 112 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 TRAV8-2A0A0B4J237 113 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 TRAV8-4A0A0B4J246 113 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 C4orf51C9J302 202 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 IGKV1-5P01602 117 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 ACYP1P07311 99 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 HLA-DMBP28068 263 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 LINC01547P58512 204 aaPredicted RBP4.44□□□□□ -1.7
SMAD4-208ENST00000589706 PCP2Q8IVA1 136 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 C15orf53Q8NAA6 179 aa4.44□□□□□ -1.7
SMAD4-208ENST00000589706 RNF138Q8WVD3 245 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms