RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 J3KRW8 73 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 M0R381 172 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 SAA4P35542 130 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 UBE2E1P51965 193 aa9.33□□□□□ -0.92
SHMT1-208ENST00000582352 MYMXA0A1B0GTQ4 84 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 H3BMG7 143 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 K7ENP7 123 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 SLC25A16P16260 332 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 SUMO2P61956 95 aaKnown RBP9.32□□□□□ -0.92
SHMT1-208ENST00000582352 TCF15Q12870 199 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 CDSNQ15517 529 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 PRR9Q5T870 116 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 C9orf139Q6ZV77 190 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 CEP295Q9C0D2 2601 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 RELNP78509 3460 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 S100A4P26447 101 aaKnown RBP9.32□□□□□ -0.92
SHMT1-208ENST00000582352 WFDC2Q14508 124 aa9.32□□□□□ -0.92
SHMT1-208ENST00000582352 SPANXB1Q9NS25 103 aaPredicted RBP9.32□□□□□ -0.92
SHMT1-208ENST00000582352 ATP5G2Q06055 141 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 SCGB2A2Q13296 93 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 RRN3P1Q2M238 152 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 TOMM6Q96B49 74 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 LENEPQ9Y5L5 61 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 TRBV7-3A0A075B6L6 115 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 LINC01548A6NM66 108 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 U3KQE9 123 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 MED13LQ71F56 2210 aa9.31□□□□□ -0.92
SHMT1-208ENST00000582352 LINC01619G3V211 115 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 C20orf78Q9BR46 151 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 DPH3P1Q9H4G8 78 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 RAXQ9Y2V3 346 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 PTPRQQ9UMZ3 2332 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 ASIPP42127 132 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 AMTNQ6UX39 209 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 OR10J6PQ8NGY7 276 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 RASL10AQ92737 203 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 GTSF1LQ9H1H1 148 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 PHLDA3Q9Y5J5 127 aa9.3□□□□□ -0.92
SHMT1-208ENST00000582352 TRAV21A0A0B4J279 112 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 MGPP08493 103 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 FOXC1Q12948 553 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 GAGE13Q4V321 117 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 NEXN-AS1Q8NBZ9 246 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 RPL39LQ96EH5 51 aaKnown RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 AJUBAQ96IF1 538 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 SIGMAR1Q99720 223 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 CYSLTR1Q9Y271 337 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 TSSC4Q9Y5U2 329 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 PTPRZ1P23471 2315 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 IGF1P05019 195 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 AZU1P20160 251 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 ADORA2A-AS1P86434 159 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 ETDBQ3ZM63 59 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 C2orf66Q6UXQ4 117 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 C14orf178Q8N769 122 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 GLMPQ8WWB7 406 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 ITLN2Q8WWU7 325 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 C20orf173Q96LM9 149 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 SVEP1Q4LDE5 3571 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 NBASA2RRP1 2371 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 CENPVL3A0A0U1RRI6 287 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 A0A1B0GWB2 263 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 CD300EQ496F6 205 aaPredicted RBP9.29□□□□□ -0.92
SHMT1-208ENST00000582352 LINC00477Q96M19 166 aa9.29□□□□□ -0.92
SHMT1-208ENST00000582352 SPRY2O43597 315 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 SH2D6Q7Z4S9 175 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 MTURNQ8N3F0 131 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 C5orf56Q8N8D9 126 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 BAALCQ8WXS3 180 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 PRADC1Q9BSG0 188 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 GAGE12HA6NDE8 117 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 LGALS1P09382 135 aaKnown RBP9.28□□□□□ -0.92
SHMT1-208ENST00000582352 ARL3P36405 182 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 SMAGPQ0VAQ4 97 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 SCGB1D4Q6XE38 83 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 ZFAND2AQ8N6M9 145 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 SPOCK3Q9BQ16 436 aa9.28□□□□□ -0.92
SHMT1-208ENST00000582352 TRAV41A0A0B4J266 112 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 TMEM238LA0A1B0GVL6 79 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 A6NJY4 79 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 FAM223BA6NKX1 122 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 ZNF815PA8K554 130 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 SCGB1A1P11684 91 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 FAM223AQ8IWN6 122 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 ASH1LQ9NR48 2969 aaKnown RBP9.27□□□□□ -0.93
SHMT1-208ENST00000582352 OVOL1O14753 267 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 NPFFO15130 113 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 HOXA3O43365 443 aaPredicted RBP9.27□□□□□ -0.93
SHMT1-208ENST00000582352 TMEM219Q86XT9 240 aa9.27□□□□□ -0.93
SHMT1-208ENST00000582352 MRPL16Q9NX20 251 aaKnown RBP9.27□□□□□ -0.93
SHMT1-208ENST00000582352 ANXA2RQ3ZCQ2 193 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 ATP6V0BQ99437 205 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 PGPEP1Q9NXJ5 209 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 PRSS29PA6NIE9 313 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 PPP1R17O96001 155 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 LCNL1Q6ZST4 164 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 LINC00527Q9UJ94 153 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 MOB4Q9Y3A3 225 aa9.26□□□□□ -0.93
SHMT1-208ENST00000582352 SPTBN1Q01082 2364 aaKnown RBP9.26□□□□□ -0.93
SHMT1-208ENST00000582352 RNASE4P34096 147 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms