RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.11□□□□□ -1.59
VPS53-217ENST00000575100 MEF2BQ02080 365 aaPredicted RBP5.11□□□□□ -1.59
VPS53-217ENST00000575100 EBI3Q14213 229 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 ZNF506Q5JVG8 444 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 CLEC19AQ6UXS0 136 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 OR2G3Q8NGZ4 309 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 MBD3L1Q8WWY6 194 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 PBDC1Q9BVG4 233 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 PARLQ9H300 379 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 LYRM2Q9NU23 88 aaPredicted RBP5.11□□□□□ -1.59
VPS53-217ENST00000575100 FAM236DA0A1B0GTK5 79 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 OOSP1A8MZH6 123 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 K7EPK0 472 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 CA2P00918 260 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 HRASP01112 189 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 FAM236CP0DP71 79 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 NDUFV3P56181 108 aaKnown RBP5.11□□□□□ -1.59
VPS53-217ENST00000575100 UBA52P62987 128 aaKnown RBP5.11□□□□□ -1.59
VPS53-217ENST00000575100 MMDQ15546 238 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 LY6EQ16553 131 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 DERL1Q9BUN8 251 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 C11orf1Q9H5F2 150 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 TMEM14BQ9NUH8 114 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 BET1LQ9NYM9 111 aa5.11□□□□□ -1.59
VPS53-217ENST00000575100 TNCP24821 2201 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 TET2Q6N021 2002 aaPredicted RBP5.1□□□□□ -1.59
VPS53-217ENST00000575100 C9JAW5 83 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 H3BP45 60 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 H3BUX3 64 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 UPK2O00526 184 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 SSSCA1O60232 199 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 DEDDO75618 318 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 CFDP00746 253 aaPredicted RBP5.1□□□□□ -1.59
VPS53-217ENST00000575100 APELAP0DMC3 54 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 SLC25A6P12236 298 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 NTF3P20783 257 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 ATP6V0CP27449 155 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 IQCJQ1A5X6 159 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 TMUB2Q71RG4 321 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 STPG4Q8N801 248 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 NKAPP1Q8N9T2 125 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 TMEM167AQ8TBQ9 72 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 TNFRSF19Q9NS68 423 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 HIGD1AQ9Y241 93 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 PLXNB1O43157 2135 aa5.1□□□□□ -1.59
VPS53-217ENST00000575100 FXYD6-FXYD2A0A087WZ82 144 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 NDUFA3O95167 84 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 IGHG2P01859 326 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 IAPPP10997 89 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 DYNLT3P51808 116 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 CYCSP99999 105 aaKnown RBP5.09□□□□□ -1.59
VPS53-217ENST00000575100 NDPQ00604 133 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 Q8N9W7 124 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 NPBQ8NG41 125 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 OR5A1Q8NGJ0 315 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 OR2T10Q8NGZ9 312 aa5.09□□□□□ -1.59
VPS53-217ENST00000575100 FAM103A1Q9BTL3 118 aaKnown RBP5.09□□□□□ -1.59
VPS53-217ENST00000575100 A0A087WW49 117 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 PSPHP1O15172 72 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 SYNGR2O43760 224 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 GNB1P62873 340 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 LGALSLQ3ZCW2 172 aaPredicted RBP5.09□□□□□ -1.6
VPS53-217ENST00000575100 LCN12Q6JVE5 192 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 REG3GQ6UW15 175 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 LINC00173Q6ZV60 143 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 ZNF429Q86V71 674 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 SPIN2AQ99865 258 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 SPIN2BQ9BPZ2 258 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 OCR1Q9BZK8 76 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 SH3BGRL3Q9H299 93 aa5.09□□□□□ -1.6
VPS53-217ENST00000575100 PKD1L1Q8TDX9 2849 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 TRAV9-2A0A087WT02 112 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 SCO2A0A1W2PP80 73 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 PLAC8L1A1L4L8 177 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 A6NDX4 124 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 J3QR89 54 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 TRBV12-3P01733 135 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 ZNF138P52744 262 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 NDUFA6P56556 154 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 BLCAPP62952 87 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 WT1-ASQ06250 92 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 TMEM267Q0VDI3 215 aaPredicted RBP5.08□□□□□ -1.6
VPS53-217ENST00000575100 VMA21Q3ZAQ7 101 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 GOLT1AQ6ZVE7 132 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 SIGLECL1Q8N7X8 197 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 C5orf56Q8N8D9 126 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 RNF5Q99942 180 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 SLC25A31Q9H0C2 315 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 NDUFA4L2Q9NRX3 87 aa5.08□□□□□ -1.6
VPS53-217ENST00000575100 IGHV7-81A0A0B4J1V7 117 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 FAM24AA6NFZ4 105 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 FGF6P10767 208 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 SLC25A4P12235 298 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 FABP4P15090 132 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 PRCDQ00LT1 54 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 KIAA0087Q14695 138 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 PLGLAQ15195 96 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 SCGB1D4Q6XE38 83 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 DEFB125Q8N687 156 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 LINC00337Q8N6G1 96 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms