RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 SYNJ2BPP57105 145 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 TAS2R45P59539 299 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 PMCHL1Q16048 86 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 SPATA45Q537H7 98 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 FAM78AQ5JUQ0 283 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 LGALS9CQ6DKI2 356 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 DPPA3Q6W0C5 159 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 RPS27LQ71UM5 84 aaKnown RBP2.49□□□□□ -2.01
NUP88-208ENST00000574087 BPIFA4PQ86YQ2 179 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 Q8N2B8 174 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 OR5C1Q8NGR4 320 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 H1FXQ92522 213 aaKnown RBP2.49□□□□□ -2.01
NUP88-208ENST00000574087 ABHD14BQ96IU4 210 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 C20orf78Q9BR46 151 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 PLEKHF2Q9H8W4 249 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 ZNF286AQ9HBT8 521 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 COL27A1Q8IZC6 1860 aaPredicted RBP2.49□□□□□ -2.01
NUP88-208ENST00000574087 DOCK8Q8NF50 2099 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 SCN1AP35498 2009 aa2.49□□□□□ -2.01
NUP88-208ENST00000574087 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.48□□□□□ -2.01
NUP88-208ENST00000574087 PLXNA4Q9HCM2 1894 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 ADAMTS7Q9UKP4 1686 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 BTAF1O14981 1849 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 ARFGEF1Q9Y6D6 1849 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 IGKV1D-17A0A075B6S4 117 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 TRBV7-7A0A0K0K1E9 115 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 A0A1W2PPM0 123 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 SNCGO76070 127 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 IGKV1-17P01599 117 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 IGKV1-5P01602 117 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 SRP19P09132 144 aaKnown RBP2.48□□□□□ -2.01
NUP88-208ENST00000574087 COL8A2P25067 703 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 RPL38P63173 70 aaKnown RBP2.48□□□□□ -2.01
NUP88-208ENST00000574087 HBBP68871 147 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 ADIGQ0VDE8 80 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 TMEM155Q4W5P6 130 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 EBLN2Q6P2I7 272 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 LINC00596Q86U02 117 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 MARCH3Q86UD3 253 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 MDP1Q86V88 176 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 MORN4Q8NDC4 146 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 OR8A1Q8NGG7 326 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 OR10AG1Q8NH19 301 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 CMTM2Q8TAZ6 248 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 MYOZ3Q8TDC0 251 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 AMELYQ99218 206 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 TMEM243Q9BU79 118 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 LINC00588Q9Y4M8 146 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 SPCS1Q9Y6A9 102 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 HELZP42694 1942 aaKnown RBP2.48□□□□□ -2.01
NUP88-208ENST00000574087 PDCD11Q14690 1871 aaKnown RBP2.48□□□□□ -2.01
NUP88-208ENST00000574087 RALGAPA2Q2PPJ7 1873 aa2.48□□□□□ -2.01
NUP88-208ENST00000574087 STRCP1A6NGW2 1772 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 MYLKQ15746 1914 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 MIA3Q5JRA6 1907 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 GRIFINA4D1Z8 144 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 RBAKDNA6NC62 111 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 ZNF736B4DX44 427 aaPredicted RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 TMEM256-PLSCR3K7ERE1 68 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 SSSCA1O60232 199 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 COX7A2P2O60397 106 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 CPSF4O95639 269 aaKnown RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 LTAP01374 205 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 CD3DP04234 171 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 RPL23P62829 140 aaKnown RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 MRPS36P82909 103 aaKnown RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 RPL7L1Q6DKI1 246 aaKnown RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 FP248Q71RG6 208 aaPredicted RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 GPHB5Q86YW7 130 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 SIGLECL1Q8N7X8 197 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 OR5H2Q8NGV7 314 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 FAM57AQ8TBR7 257 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 AQP3Q92482 292 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 PRELID3AQ96N28 172 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 TIMM17AQ99595 171 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 RNF5Q99942 180 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 PMCHL2Q9BQD1 86 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 SLC39A9Q9NUM3 307 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 ZNF492Q9P255 531 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 KLK5Q9Y337 293 aaPredicted RBP2.47□□□□□ -2.01
NUP88-208ENST00000574087 A0A0G2JMZ2 1700 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 LRRC37A2A6NM11 1700 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 LRRC37AA6NMS7 1700 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 CCDC88CQ9P219 2028 aa2.47□□□□□ -2.01
NUP88-208ENST00000574087 NRXN3Q9Y4C0 1643 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 FAM24AA6NFZ4 105 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 BUB1B-PAK6H3BSN5 160 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 J3QLW9 94 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 J3QRE1 110 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 IGLV2-8P01709 118 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 INAFM2P0DMQ5 153 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 COX6A1P12074 109 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 CBLN1P23435 193 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 SNRPD3P62318 126 aaKnown RBP2.46□□□□□ -2.02
NUP88-208ENST00000574087 CCL20P78556 96 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 ZNF816Q0VGE8 651 aaPredicted RBP2.46□□□□□ -2.02
NUP88-208ENST00000574087 CDK5R1Q15078 307 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 RBMY1FQ15415 496 aaKnown RBP2.46□□□□□ -2.02
NUP88-208ENST00000574087 MPV17LQ2QL34 196 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 SBSPONQ8IVN8 264 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms