RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 ARL6IP6Q8N6S5 226 aa12.27□□□□□ -0.45
CHD3-214ENST00000572579 CMTM2Q8TAZ6 248 aa12.27□□□□□ -0.45
CHD3-214ENST00000572579 TREM1Q9NP99 234 aa12.27□□□□□ -0.45
CHD3-214ENST00000572579 TRAV4A0A0B4J268 109 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 A0A1W2PPV4 95 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 STAG3L2P0CL84 134 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 STAG3L3P0CL85 134 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 DPPA3Q6W0C5 159 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 RAB24Q969Q5 203 aa12.26□□□□□ -0.45
CHD3-214ENST00000572579 TRAV21A0A0B4J279 112 aa12.25□□□□□ -0.45
CHD3-214ENST00000572579 M0R2P5 195 aa12.25□□□□□ -0.45
CHD3-214ENST00000572579 DNAH10OSP0CZ25 163 aa12.25□□□□□ -0.45
CHD3-214ENST00000572579 HSD17B11Q8NBQ5 300 aa12.25□□□□□ -0.45
CHD3-214ENST00000572579 OR2G3Q8NGZ4 309 aa12.25□□□□□ -0.45
CHD3-214ENST00000572579 ATP6V0CP27449 155 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 SRIP30626 198 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 OR4C5Q8NGB2 326 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 AQP10Q96PS8 301 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 SH3BGRL3Q9H299 93 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 SCRT2Q9NQ03 307 aa12.24□□□□□ -0.45
CHD3-214ENST00000572579 DNAH8Q96JB1 4490 aa12.23□□□□□ -0.45
CHD3-214ENST00000572579 TCRAP04437 139 aa12.23□□□□□ -0.45
CHD3-214ENST00000572579 GATA1P15976 413 aaPredicted RBP12.23□□□□□ -0.45
CHD3-214ENST00000572579 GCHFRP30047 84 aa12.23□□□□□ -0.45
CHD3-214ENST00000572579 CDC34P49427 236 aaPredicted RBP12.23□□□□□ -0.45
CHD3-214ENST00000572579 FAM74A1Q5RGS3 127 aa12.23□□□□□ -0.45
CHD3-214ENST00000572579 TMEM75Q8N9X5 138 aa12.23□□□□□ -0.45
CHD3-214ENST00000572579 A0A087WTM6 91 aa12.22□□□□□ -0.45
CHD3-214ENST00000572579 GGTLC3B5MD39 225 aa12.22□□□□□ -0.45
CHD3-214ENST00000572579 LY96Q9Y6Y9 160 aa12.22□□□□□ -0.45
CHD3-214ENST00000572579 HERC1Q15751 4861 aa12.22□□□□□ -0.45
CHD3-214ENST00000572579 VPS13BQ7Z7G8 4022 aa12.22□□□□□ -0.45
CHD3-214ENST00000572579 ORM1P02763 201 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 XGP55808 180 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 ASB13Q8WXK3 278 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 LINC00479Q96M42 142 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 PSMG3Q9BT73 122 aaPredicted RBP12.21□□□□□ -0.45
CHD3-214ENST00000572579 SDF2L1Q9HCN8 221 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 PGPEP1Q9NXJ5 209 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 PSG8Q9UQ74 426 aa12.21□□□□□ -0.45
CHD3-214ENST00000572579 KRTAP10-1P60331 282 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 SUMO1P63165 101 aaKnown RBP12.2□□□□□ -0.46
CHD3-214ENST00000572579 ZNF726P1Q15940 193 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 CFAP126Q5VTH2 177 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 C5orf17Q8NAS9 161 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 C9orf85Q96MD7 179 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 MSRB1Q9NZV6 116 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 EPDR1Q9UM22 224 aa12.2□□□□□ -0.46
CHD3-214ENST00000572579 RNF222A6NCQ9 220 aa12.19□□□□□ -0.46
CHD3-214ENST00000572579 C9JCJ5 164 aa12.19□□□□□ -0.46
CHD3-214ENST00000572579 RS1O15537 224 aa12.19□□□□□ -0.46
CHD3-214ENST00000572579 RNASE3P12724 160 aaKnown RBP12.19□□□□□ -0.46
CHD3-214ENST00000572579 SLC25A29Q8N8R3 303 aa12.19□□□□□ -0.46
CHD3-214ENST00000572579 PCNPQ8WW12 178 aaKnown RBP12.19□□□□□ -0.46
CHD3-214ENST00000572579 PGPEP1LA6NFU8 196 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 GCGP01275 180 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 ZNF876PQ49A33 203 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 RPL7L1Q6DKI1 246 aaKnown RBP12.18□□□□□ -0.46
CHD3-214ENST00000572579 Q6ZSN1 163 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 NFE4Q86UQ8 179 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 KCNS1Q96KK3 526 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 TXNDC17Q9BRA2 123 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 MED28Q9H204 178 aa12.18□□□□□ -0.46
CHD3-214ENST00000572579 IGHV3-73A0A0B4J1V6 119 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 PTTG1O95997 202 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 TIRAPP58753 221 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 ERVFC1-1P60608 527 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 SERF2P84101 59 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 PRNTQ86SH4 94 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 TNFSF18Q9UNG2 199 aa12.17□□□□□ -0.46
CHD3-214ENST00000572579 TRAV9-2A0A087WT02 112 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 TRAV34A0A0B4J273 112 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 IGKV3D-20A0A0C4DH25 116 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 SERTM2A0A1B0GWG4 89 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 G3V3Q6 166 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 TAAR5O14804 337 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 CRYGDP07320 174 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 PFN1P07737 140 aaKnown RBP12.16□□□□□ -0.46
CHD3-214ENST00000572579 EVI2AP22794 236 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 FLI1Q01543 452 aaPredicted RBP12.16□□□□□ -0.46
CHD3-214ENST00000572579 BATF3Q9NR55 127 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 Q9UF83 564 aa12.16□□□□□ -0.46
CHD3-214ENST00000572579 LRCOL1A6NCL2 159 aa12.15□□□□□ -0.46
CHD3-214ENST00000572579 FBLL1A6NHQ2 334 aaKnown RBP12.15□□□□□ -0.46
CHD3-214ENST00000572579 CXorf1O96002 111 aa12.15□□□□□ -0.46
CHD3-214ENST00000572579 ZNF506Q5JVG8 444 aa12.15□□□□□ -0.46
CHD3-214ENST00000572579 ACTR3CQ9C0K3 210 aaPredicted RBP12.15□□□□□ -0.46
CHD3-214ENST00000572579 K7EP13 123 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 MBP02144 154 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 GIPP09681 153 aaPredicted RBP12.14□□□□□ -0.47
CHD3-214ENST00000572579 CYB561D1Q8N8Q1 229 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 NHLRC2Q8NBF2 726 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 PTH2Q96A98 100 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 NDFIP1Q9BT67 221 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 TMEM167BQ9NRX6 74 aa12.14□□□□□ -0.47
CHD3-214ENST00000572579 IGHV3-38A0A0C4DH36 116 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 A0A1W2PRE2 83 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 CRIP1P50238 77 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 SMUG1Q53HV7 270 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 LINC01556Q5JQF7 62 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms