RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 OR4C16Q8NGL9 310 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 OR13C8Q8NGS7 320 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 LSM10Q969L4 123 aaKnown RBP4.38□□□□□ -1.71
VPS53-212ENST00000572259 KCNS1Q96KK3 526 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 SOSTQ9BQB4 213 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 C2orf88Q9BSF0 95 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 EIF5A2Q9GZV4 153 aaKnown RBP4.38□□□□□ -1.71
VPS53-212ENST00000572259 F11RQ9Y624 299 aaKnown RBP4.38□□□□□ -1.71
VPS53-212ENST00000572259 TGP01266 2768 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 TRAV3A0A0B4J244 114 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 FAM236DA0A1B0GTK5 79 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 GGCTO75223 188 aaKnown RBP4.37□□□□□ -1.71
VPS53-212ENST00000572259 IFNA17P01571 189 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 FAM236CP0DP71 79 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 FGF6P10767 208 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 FOLR2P14207 255 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 S100PP25815 95 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 SNCAP37840 140 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 ETV6P41212 452 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 HERVK_113P61574 105 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 ERCC8Q13216 396 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 C10orf55Q5SWW7 151 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 PLET1Q6UQ28 207 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 Q6ZRU5 148 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 Q6ZTC4 211 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 SLC25A21Q9BQT8 299 aaPredicted RBP4.37□□□□□ -1.71
VPS53-212ENST00000572259 TMEM243Q9BU79 118 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 TMEM70Q9BUB7 260 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 NDUFA4L2Q9NRX3 87 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 TMEM14BQ9NUH8 114 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 UQCC1Q9NVA1 299 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 RBM12B-AS1Q9P1G2 102 aa4.37□□□□□ -1.71
VPS53-212ENST00000572259 A0A1B0GV90 55 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 IGLC7A0M8Q6 106 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 NAP1L6A6NFF2 107 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 E7EUB6 86 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 HMGB3O15347 200 aaKnown RBP4.36□□□□□ -1.71
VPS53-212ENST00000572259 CDS2O95674 445 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 PRH1P02810 166 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 CKS1BP61024 79 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 GUCA2BQ16661 112 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 KLK9Q2XQG4 91 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 RNF212Q495C1 297 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 LEMD1Q68G75 181 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 KRTAP5-11Q6L8G4 156 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 GPHB5Q86YW7 130 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 RBPMSQ93062 196 aaKnown RBP4.36□□□□□ -1.71
VPS53-212ENST00000572259 TP53RKQ96S44 253 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 LINC01587Q99440 93 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 SAMD10Q9BYL1 202 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 TMEM222Q9H0R3 208 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 NAA60Q9H7X0 242 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 KLK9Q9UKQ9 250 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 PSG8Q9UQ74 426 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 RFNGQ9Y644 331 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 MEGF8Q7Z7M0 2845 aa4.36□□□□□ -1.71
VPS53-212ENST00000572259 IGLV8-61A0A075B6I0 122 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 IGLV11-55A0A075B6I3 123 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 IGHV3-35A0A0C4DH35 117 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 CRYM-AS1A6NIL9 109 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 CORTO00230 105 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 PRB2P02812 416 aaPredicted RBP4.35□□□□□ -1.71
VPS53-212ENST00000572259 OR5AC1P0C628 307 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 MEOX2P50222 304 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 MP68P56378 58 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 RPL23P62829 140 aaKnown RBP4.35□□□□□ -1.71
VPS53-212ENST00000572259 GNG5P63218 68 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 PRCDQ00LT1 54 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 SP6Q3SY56 376 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 FAAP20Q6NZ36 180 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 TCF24Q7RTU0 167 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 Q8NBF4 154 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 LHFPL5Q8TAF8 219 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 DYNLRB2Q8TF09 96 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 CCDC32Q9BV29 185 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 PBDC1Q9BVG4 233 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 DHRS4-AS1Q9P1J3 65 aa4.35□□□□□ -1.71
VPS53-212ENST00000572259 TRAV8-1A0A0A6YYK1 113 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 TRAV26-2A0A0B4J265 109 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 A0A1B0GW64 132 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 DUXBA0A1W2PPF3 345 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 TMEM250H0YL14 139 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 DNASE2O00115 360 aaPredicted RBP4.34□□□□□ -1.71
VPS53-212ENST00000572259 LGALS9O00182 355 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 NDUFC2O95298 119 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 IGKV1-39P01597 117 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 IGHV3-23P01764 117 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 IGKV1D-39P04432 117 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 RPS28P62857 69 aaKnown RBP4.34□□□□□ -1.71
VPS53-212ENST00000572259 DEFA5Q01523 94 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 WT1-ASQ06250 92 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 FCN2Q15485 313 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 ZNF79Q15937 498 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 ORMDL2Q53FV1 153 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 Q56UQ5 140 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 ZFAND6Q6FIF0 208 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 LINC00299Q6ZSB3 139 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 GTSCR1Q86UQ5 136 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 OR10G4Q8NGN3 311 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 S100ZQ8WXG8 99 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms