RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 TDRG1Q3Y452 100 aa12.67□□□□□ -0.38
NUP88-203ENST00000572019 OR10J3Q5JRS4 329 aa12.67□□□□□ -0.38
NUP88-203ENST00000572019 DPPA3Q6W0C5 159 aa12.67□□□□□ -0.38
NUP88-203ENST00000572019 SLC25A29Q8N8R3 303 aa12.67□□□□□ -0.38
NUP88-203ENST00000572019 TVP23CQ96ET8 276 aa12.67□□□□□ -0.38
NUP88-203ENST00000572019 TCRBP04435 133 aa12.66□□□□□ -0.38
NUP88-203ENST00000572019 ATP6V1FQ16864 119 aa12.66□□□□□ -0.38
NUP88-203ENST00000572019 DEFB104AQ8WTQ1 72 aa12.66□□□□□ -0.38
NUP88-203ENST00000572019 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.65□□□□□ -0.38
NUP88-203ENST00000572019 F6UZH7 168 aa12.65□□□□□ -0.38
NUP88-203ENST00000572019 OR7C2O60412 319 aa12.65□□□□□ -0.38
NUP88-203ENST00000572019 SCXQ7RTU7 201 aa12.65□□□□□ -0.38
NUP88-203ENST00000572019 OR5C1Q8NGR4 320 aa12.65□□□□□ -0.38
NUP88-203ENST00000572019 NUDT15Q9NV35 164 aa12.65□□□□□ -0.38
NUP88-203ENST00000572019 IGHV3-73A0A0B4J1V6 119 aa12.64□□□□□ -0.39
NUP88-203ENST00000572019 TRAV8-6A0A0B4J262 113 aa12.64□□□□□ -0.39
NUP88-203ENST00000572019 LYRM1O43325 122 aa12.64□□□□□ -0.39
NUP88-203ENST00000572019 CSN1S1P47710 185 aa12.64□□□□□ -0.39
NUP88-203ENST00000572019 SH2D6Q7Z4S9 175 aa12.64□□□□□ -0.39
NUP88-203ENST00000572019 UBE2L3P68036 154 aaKnown RBP12.63□□□□□ -0.39
NUP88-203ENST00000572019 HYLS1Q96M11 299 aa12.63□□□□□ -0.39
NUP88-203ENST00000572019 RPH3ALQ9UNE2 315 aa12.63□□□□□ -0.39
NUP88-203ENST00000572019 TRAV8-1A0A0A6YYK1 113 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 FBLL1A6NHQ2 334 aaKnown RBP12.62□□□□□ -0.39
NUP88-203ENST00000572019 CNPY1Q3B7I2 92 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 LELP1Q5T871 98 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 CFAP126Q5VTH2 177 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 DNAJC30Q96LL9 226 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 WDR61Q9GZS3 305 aaKnown RBP12.62□□□□□ -0.39
NUP88-203ENST00000572019 OR5AC2Q9NZP5 309 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 LENEPQ9Y5L5 61 aa12.62□□□□□ -0.39
NUP88-203ENST00000572019 C11orf21Q9P2W6 132 aa12.61□□□□□ -0.39
NUP88-203ENST00000572019 H0YIZ8 118 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 RS1O15537 224 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 SIX6O95475 246 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 PFN1P07737 140 aaKnown RBP12.6□□□□□ -0.39
NUP88-203ENST00000572019 SERTAD4-AS1Q5TG53 156 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 BAALCQ8WXS3 180 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 Q9UF83 564 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 PKHD1L1Q86WI1 4243 aa12.6□□□□□ -0.39
NUP88-203ENST00000572019 LAGE3Q14657 143 aa12.59□□□□□ -0.39
NUP88-203ENST00000572019 GOLT1AQ6ZVE7 132 aa12.59□□□□□ -0.39
NUP88-203ENST00000572019 DAZ4Q86SG3 579 aaKnown RBP12.59□□□□□ -0.39
NUP88-203ENST00000572019 TMED6Q8WW62 240 aa12.59□□□□□ -0.39
NUP88-203ENST00000572019 SGK494Q96LW2 274 aa12.59□□□□□ -0.39
NUP88-203ENST00000572019 DAZ3Q9NR90 486 aaKnown RBP12.59□□□□□ -0.39
NUP88-203ENST00000572019 TRAV21A0A0B4J279 112 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 PGPA6NDG6 321 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 H2AFB2P0C5Z0 115 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 ZNF80P51504 273 aaPredicted RBP12.58□□□□□ -0.4
NUP88-203ENST00000572019 GNG5P63218 68 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 RHOHQ15669 191 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 ZNF876PQ49A33 203 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 TMEM75Q8N9X5 138 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 PRADC1Q9BSG0 188 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 GTSF1LQ9H1H1 148 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 SDF2L1Q9HCN8 221 aa12.58□□□□□ -0.4
NUP88-203ENST00000572019 TRBV6-4A0A1B0GX49 114 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 LRRC37A5PQ49AS3 106 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 ATP6V0E2Q8NHE4 81 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 TM2D2Q9BX73 214 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 TREM1Q9NP99 234 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 OTORQ9NRC9 128 aa12.57□□□□□ -0.4
NUP88-203ENST00000572019 PGPEP1LA6NFU8 196 aa12.56□□□□□ -0.4
NUP88-203ENST00000572019 FFAR4Q5NUL3 377 aa12.56□□□□□ -0.4
NUP88-203ENST00000572019 SYT8Q8NBV8 401 aa12.56□□□□□ -0.4
NUP88-203ENST00000572019 ASB13Q8WXK3 278 aa12.56□□□□□ -0.4
NUP88-203ENST00000572019 LINC00694P0DN24 101 aa12.55□□□□□ -0.4
NUP88-203ENST00000572019 ZNF506Q5JVG8 444 aa12.55□□□□□ -0.4
NUP88-203ENST00000572019 CIRBP-AS1Q8TBR5 109 aa12.55□□□□□ -0.4
NUP88-203ENST00000572019 C9orf85Q96MD7 179 aa12.55□□□□□ -0.4
NUP88-203ENST00000572019 PLA2G2DQ9UNK4 145 aa12.55□□□□□ -0.4
NUP88-203ENST00000572019 KHDC3LQ587J8 217 aa12.54□□□□□ -0.4
NUP88-203ENST00000572019 CHAC1Q9BUX1 264 aa12.54□□□□□ -0.4
NUP88-203ENST00000572019 NMES1Q9C002 83 aa12.54□□□□□ -0.4
NUP88-203ENST00000572019 KCNIP2Q9NS61 270 aa12.54□□□□□ -0.4
NUP88-203ENST00000572019 MBD2Q9UBB5 411 aa12.54□□□□□ -0.4
NUP88-203ENST00000572019 GAGE12JA6NER3 117 aa12.53□□□□□ -0.4
NUP88-203ENST00000572019 HNRNPA3P51991 378 aaKnown RBP12.53□□□□□ -0.4
NUP88-203ENST00000572019 GAGE1Q13065 139 aa12.53□□□□□ -0.4
NUP88-203ENST00000572019 GAGE4Q13068 117 aa12.53□□□□□ -0.4
NUP88-203ENST00000572019 GAGE5Q13069 117 aa12.53□□□□□ -0.4
NUP88-203ENST00000572019 GAGE13Q4V321 117 aa12.53□□□□□ -0.4
NUP88-203ENST00000572019 RNASE3P12724 160 aaKnown RBP12.52□□□□□ -0.41
NUP88-203ENST00000572019 CMTM2Q8TAZ6 248 aa12.52□□□□□ -0.41
NUP88-203ENST00000572019 KCNS1Q96KK3 526 aa12.52□□□□□ -0.41
NUP88-203ENST00000572019 TRAV8-3A0A0A6YYJ7 113 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 RBFOX3A6NFN3 312 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 C17orf112F2Z3M2 114 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 HMGB3O15347 200 aaKnown RBP12.51□□□□□ -0.41
NUP88-203ENST00000572019 OXTP01178 125 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 ATP5SQ99766 215 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 SAMD10Q9BYL1 202 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 SMIM3Q9BZL3 60 aa12.51□□□□□ -0.41
NUP88-203ENST00000572019 MGST1P10620 155 aaKnown RBP12.5□□□□□ -0.41
NUP88-203ENST00000572019 PARLQ9H300 379 aa12.5□□□□□ -0.41
NUP88-203ENST00000572019 JPT2Q9H910 190 aa12.5□□□□□ -0.41
NUP88-203ENST00000572019 RNF222A6NCQ9 220 aa12.49□□□□□ -0.41
NUP88-203ENST00000572019 TAS2R45P59539 299 aa12.49□□□□□ -0.41
NUP88-203ENST00000572019 C14orf178Q8N769 122 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms