RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 J3KRW8 73 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 RS1O15537 224 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ZNF324O75467 553 aaPredicted RBP7.45□□□□□ -1.22
VPS53-207ENST00000570510 CT45A10P0DMU9 189 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ZNF138P52744 262 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 DAZ2Q13117 558 aaKnown RBP7.45□□□□□ -1.22
VPS53-207ENST00000570510 SLAQ13239 276 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ANXA2RQ3ZCQ2 193 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 KCNRGQ8N5I3 272 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 HSD17B11Q8NBQ5 300 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ZNF680Q8NEM1 530 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 CMTM2Q8TAZ6 248 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 BLNKQ8WV28 456 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ST6GAL2Q96JF0 529 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ZNF492Q9P255 531 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 TP53TG3Q9ULZ0 132 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 ARL2-SNX15V9GYD0 113 aa7.45□□□□□ -1.22
VPS53-207ENST00000570510 A0A1W2PRE2 83 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 C7orf71A4D174 169 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 PRAC2D3DTV9 90 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 K7EQM0 130 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 M0R3E3 92 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 OR10J4P0C629 311 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 SEC11BP0C7V7 166 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 PRB4P10163 310 aaPredicted RBP7.44□□□□□ -1.22
VPS53-207ENST00000570510 DPPA3Q6W0C5 159 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 WFDC10BQ8IUB3 73 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 PCNPQ8WW12 178 aaKnown RBP7.44□□□□□ -1.22
VPS53-207ENST00000570510 RAB24Q969Q5 203 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 ARPC5LQ9BPX5 153 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 AGPAT4-IT1Q9H0P7 198 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 PRO0255Q9UI72 69 aa7.44□□□□□ -1.22
VPS53-207ENST00000570510 CTXND1A0A1B0GTU2 59 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 DIRC3C9JPN6 131 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 ARPC5O15511 151 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 IGHV3-53P01767 116 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 SRIP30626 198 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 RAB2AP61019 212 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 RANP62826 216 aaKnown RBP7.43□□□□□ -1.22
VPS53-207ENST00000570510 ZNF415Q09FC8 603 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 LGALSLQ3ZCW2 172 aaPredicted RBP7.43□□□□□ -1.22
VPS53-207ENST00000570510 AKR1C8PQ5T2L2 129 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 IBA57Q5T440 356 aaKnown RBP7.43□□□□□ -1.22
VPS53-207ENST00000570510 GFI1BQ5VTD9 330 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 RPL7L1Q6DKI1 246 aaKnown RBP7.43□□□□□ -1.22
VPS53-207ENST00000570510 TCTE3Q8IZS6 198 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 EXOC3-AS1Q8N2X6 119 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 C5orf17Q8NAS9 161 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 PHYHIPLQ96FC7 376 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 Q9HAA7 133 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 GSN-AS1Q9NRJ2 163 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 HHLA3Q9XRX5 114 aa7.43□□□□□ -1.22
VPS53-207ENST00000570510 TRAV12-3A0A0B4J271 114 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 LRCOL1A6NCL2 159 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 PGPA6NDG6 321 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 H3BTX0 84 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 GPX1P07203 203 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 ARL14EPLP0DKL9 152 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 GCHFRP30047 84 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 FHITP49789 147 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 KIR3DS1Q14943 382 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 Q6AWC8 147 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 EIF5AL1Q6IS14 154 aaKnown RBP7.42□□□□□ -1.22
VPS53-207ENST00000570510 FAM122CQ6P4D5 195 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 ZFAND2AQ8N6M9 145 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 STOML3Q8TAV4 291 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 C8orf49Q96NF6 230 aa7.42□□□□□ -1.22
VPS53-207ENST00000570510 KANTRA0A1W2PQU2 76 aa7.41□□□□□ -1.22
VPS53-207ENST00000570510 RAB5CP51148 216 aa7.41□□□□□ -1.22
VPS53-207ENST00000570510 TDRG1Q3Y452 100 aa7.41□□□□□ -1.22
VPS53-207ENST00000570510 Q6ZNX1 250 aa7.41□□□□□ -1.22
VPS53-207ENST00000570510 EIF4E3Q8N5X7 224 aaKnown RBP7.41□□□□□ -1.22
VPS53-207ENST00000570510 CYTL1Q9NRR1 136 aa7.41□□□□□ -1.22
VPS53-207ENST00000570510 RNF213Q63HN8 5207 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 LRP1Q07954 4544 aaKnown RBP7.4□□□□□ -1.22
VPS53-207ENST00000570510 TRGV4A0A0C4DH28 118 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 BCL2L11O43521 198 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 SNRPCP09234 159 aaKnown RBP7.4□□□□□ -1.22
VPS53-207ENST00000570510 PPT1P50897 306 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 SCXQ7RTU7 201 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 HIST1H2BAQ96A08 127 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 NDFIP1Q9BT67 221 aa7.4□□□□□ -1.22
VPS53-207ENST00000570510 IGKV2-40A0A087WW87 121 aaPredicted RBP7.39□□□□□ -1.23
VPS53-207ENST00000570510 F6UZH7 168 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 IGKV2D-40P01614 121 aaPredicted RBP7.39□□□□□ -1.23
VPS53-207ENST00000570510 TPT1P13693 172 aaKnown RBP7.39□□□□□ -1.23
VPS53-207ENST00000570510 GYPEP15421 78 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 CRYBA4P53673 196 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 ERCC8Q13216 396 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 SAPCD1Q5SSQ6 148 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 Q6ZSA8 131 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 TMEM75Q8N9X5 138 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 HYLS1Q96M11 299 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 VGLL1Q99990 258 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 TXNDC17Q9BRA2 123 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 SH3BGRL3Q9H299 93 aa7.39□□□□□ -1.23
VPS53-207ENST00000570510 IGHV1OR15-1A0A075B7D0 117 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 TRAV21A0A0B4J279 112 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 IGHV3-38A0A0C4DH36 116 aa7.38□□□□□ -1.23
VPS53-207ENST00000570510 RGS13O14921 159 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms