RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 H3BVH4 76 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 DSCR9P59020 149 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 OR8A1Q8NGG7 326 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 OR10AG1Q8NH19 301 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 FASNP49327 2511 aaKnown RBP7.55□□□□□ -1.2
VPS53-206ENST00000570359 IGKV3D-20A0A0C4DH25 116 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 FAM231BA6NCW3 169 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 RNASE4P34096 147 aaKnown RBP7.55□□□□□ -1.2
VPS53-206ENST00000570359 MRPL51Q4U2R6 128 aaKnown RBP7.55□□□□□ -1.2
VPS53-206ENST00000570359 PRSS57Q6UWY2 283 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 GPHB5Q86YW7 130 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 OR4C5Q8NGB2 326 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 A0A087X0K7 114 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 hDV102S1A0JD36 115 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 NDUFA4O00483 81 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 SYNJ2BPP57105 145 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 DEFB113Q30KQ7 82 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 Q6ZN92 141 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 C18orf65Q6ZTR6 163 aa7.55□□□□□ -1.2
VPS53-206ENST00000570359 PEF1Q9UBV8 284 aaKnown RBP7.55□□□□□ -1.2
VPS53-206ENST00000570359 A0A096LNT2 108 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 M0R381 172 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 NPYP01303 97 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 ZNF688P0C7X2 276 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 AP5S1Q9NUS5 200 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 A0A0G2JLM5 398 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 WFDC11Q8NEX6 87 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 OR10J6PQ8NGY7 276 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 USMG5Q96IX5 58 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 C18orf15Q96N68 181 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 SPANXN1Q5VSR9 72 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 FAM104BQ5XKR9 115 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 TMEM190Q8WZ59 177 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 TMEM70Q9BUB7 260 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 DAZ1Q9NQZ3 744 aaKnown RBP7.54□□□□□ -1.2
VPS53-206ENST00000570359 SIGLEC8Q9NYZ4 499 aa7.54□□□□□ -1.2
VPS53-206ENST00000570359 C2orf70A6NJV1 201 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 TMEM238C9JI98 176 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 S100A4P26447 101 aaKnown RBP7.53□□□□□ -1.2
VPS53-206ENST00000570359 TSPOP30536 169 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 RNF151Q2KHN1 245 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 OCIAD2Q56VL3 154 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 Q6AWC8 147 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 ORMDL3Q8N138 153 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 VPS25Q9BRG1 176 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 U3KQE9 123 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 IGHV7-4-1A0A0J9YVY3 117 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 OR4C46A6NHA9 309 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 IGLV1-40P01703 118 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 GATA3P23771 443 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 C9orf139Q6ZV77 190 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 ZNF575Q86XF7 245 aa7.53□□□□□ -1.2
VPS53-206ENST00000570359 PSMG4Q5JS54 123 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 CST9LQ9H4G1 147 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 VPREB3Q9UKI3 123 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 NIPBLQ6KC79 2804 aaeCLIP7.52□□□□□ -1.21
VPS53-206ENST00000570359 TRAV12-2A0A075B6T6 113 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 SNAI2O43623 268 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 OR5AL1P0C617 328 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 IGLC6P0CF74 106 aa7.52□□□□□ -1.21
VPS53-206ENST00000570359 CRIP2P52943 208 aaPredicted RBP7.52□□□□□ -1.21
VPS53-206ENST00000570359 JMJD1CQ15652 2540 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 IGHV4OR15-8A0A075B7B6 117 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 A0A087WW49 117 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 A0A1W2PRX2 142 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 CBY3A6NI87 242 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 SYS1-DBNDD2H3BUS1 97 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 HTN1P15515 57 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 PSMB8P28062 276 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 CHCHD1Q96BP2 118 aaKnown RBP7.51□□□□□ -1.21
VPS53-206ENST00000570359 GNRH2O43555 120 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 IGLL1P15814 213 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 MAP1LC3CQ9BXW4 147 aa7.51□□□□□ -1.21
VPS53-206ENST00000570359 K7ERU9 68 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 MGPP08493 103 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 SLURP1P55000 103 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 SMPXQ9UHP9 88 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 RBAKDNA6NC62 111 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 CFHR3Q02985 330 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 ANXA2RQ3ZCQ2 193 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 LINC01559Q495D7 138 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 C9orf47Q6ZRZ4 202 aa7.5□□□□□ -1.21
VPS53-206ENST00000570359 GCN1Q92616 2671 aaKnown RBP7.5□□□□□ -1.21
VPS53-206ENST00000570359 TRAV12-3A0A0B4J271 114 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 KLK9Q2XQG4 91 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 PET117Q6UWS5 81 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 ZNF702PQ9H963 129 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 KLK9Q9UKQ9 250 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 A0A1B0GW15 77 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 H3BUA1 57 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 HINT1P49773 126 aaPredicted RBP7.49□□□□□ -1.21
VPS53-206ENST00000570359 RNF185Q96GF1 192 aa7.49□□□□□ -1.21
VPS53-206ENST00000570359 FBLL1A6NHQ2 334 aaKnown RBP7.48□□□□□ -1.21
VPS53-206ENST00000570359 SOCS3O14543 225 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 HOXD3P31249 432 aaPredicted RBP7.48□□□□□ -1.21
VPS53-206ENST00000570359 Q6YL49 198 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 ZNF493Q6ZR52 646 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 ZFAND2AQ8N6M9 145 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 C14orf178Q8N769 122 aaPredicted RBP7.48□□□□□ -1.21
VPS53-206ENST00000570359 MS4A6AQ9H2W1 248 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms