RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 FLI1Q01543 452 aaPredicted RBP6.91□□□□□ -1.3
CLK3-220ENST00000567992 DAZ2Q13117 558 aaKnown RBP6.91□□□□□ -1.3
CLK3-220ENST00000567992 TDRG1Q3Y452 100 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 MUC21Q5SSG8 566 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 IBA57Q5T440 356 aaKnown RBP6.91□□□□□ -1.3
CLK3-220ENST00000567992 Q86TA4 180 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.91□□□□□ -1.3
CLK3-220ENST00000567992 GSN-AS1Q9NRJ2 163 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 KLF12Q9Y4X4 402 aa6.91□□□□□ -1.3
CLK3-220ENST00000567992 TRAV1-1A0A0B4J248 108 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 TRAV34A0A0B4J273 112 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 FBLL1A6NHQ2 334 aaKnown RBP6.9□□□□□ -1.3
CLK3-220ENST00000567992 SNURFLB1AK76 121 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 K7EQM0 130 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 SPINK4O60575 86 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 PAGE4O60829 102 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 H2AFB1P0C5Y9 115 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 HTN3P15516 51 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 ADCYAP1P18509 176 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 CCL20P78556 96 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 LGALS9CQ6DKI2 356 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 Q6ZTI0 123 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 PRNTQ86SH4 94 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 HIST1H2BAQ96A08 127 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 TCEAL7Q9BRU2 100 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 C11orf21Q9P2W6 132 aa6.9□□□□□ -1.3
CLK3-220ENST00000567992 DNAH17Q9UFH2 4485 aa6.9□□□□□ -1.31
CLK3-220ENST00000567992 TRAV21A0A0B4J279 112 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GAGE12BA1L429 117 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 F8W036 122 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GAGE7O76087 117 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 SNAPINO95295 136 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 LY6G6CO95867 125 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GCGP01275 180 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GAGE12FP0CL80 117 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GAGE12GP0CL81 117 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 GAGE12IP0CL82 117 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 SRSF3P84103 164 aaKnown RBP6.89□□□□□ -1.31
CLK3-220ENST00000567992 TMEM88Q6PEY1 159 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 CLRN3Q8NCR9 226 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 C18orf15Q96N68 181 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 NDFIP1Q9BT67 221 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 NDUFAF3Q9BU61 184 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 MDFICQ9P1T7 246 aa6.89□□□□□ -1.31
CLK3-220ENST00000567992 IGHV3-16A0A0C4DH30 117 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 TRBV6-1A0A0K0K1D8 114 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 LCE2BO14633 110 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 TYMSP04818 313 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 ATP5G1P05496 136 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 PFN1P07737 140 aaKnown RBP6.88□□□□□ -1.31
CLK3-220ENST00000567992 HOXA5P20719 270 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 PEA15Q15121 130 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 TMEM183BQ1AE95 376 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 FAM74A3Q4VXF1 159 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 CST9LP1Q5W188 147 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 FAM159AQ6UWV7 190 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 COX8CQ7Z4L0 72 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 TMEM183AQ8IXX5 376 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 FAM210BQ96KR6 192 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 SMDT1Q9H4I9 107 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 NAGKQ9UJ70 344 aa6.88□□□□□ -1.31
CLK3-220ENST00000567992 MUC4Q99102 2169 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 TRGV11A0A075B6L2 103 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 TRGV1A0A0A0MS02 117 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 SCO2A0A1W2PP80 73 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 F5H768 121 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 GNRH2O43555 120 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 LTAP01374 205 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 PPT1P50897 306 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 ZNF415Q09FC8 603 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 LGALS9BQ3B8N2 356 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 SMUG1Q53HV7 270 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 SAPCD1Q5SSQ6 148 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 ZC2HC1AQ96GY0 325 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 FMC1Q96HJ9 113 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 MRPL16Q9NX20 251 aaKnown RBP6.87□□□□□ -1.31
CLK3-220ENST00000567992 FAT2Q9NYQ8 4349 aa6.87□□□□□ -1.31
CLK3-220ENST00000567992 HECTD4Q9Y4D8 3996 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 SFTA3P0C7M3 94 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 AKR1C3P42330 323 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 CRIP1P50238 77 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 MANBALQ9NQG1 85 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 GNG13Q9P2W3 67 aa6.86□□□□□ -1.31
CLK3-220ENST00000567992 NACAE9PAV3 2078 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 IGKV3D-20A0A0C4DH25 116 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 C9JQL5 133 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 RASL10AQ92737 203 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 C11orf52Q96A22 123 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 KCNS1Q96KK3 526 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 SDF2L1Q9HCN8 221 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 ZFP30Q9Y2G7 519 aa6.85□□□□□ -1.31
CLK3-220ENST00000567992 TRGV2A0A075B6R0 118 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 TRAV26-1A0A087WT03 109 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 UBE2G1P62253 170 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 ZNF674Q2M3X9 581 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 ZNF575Q86XF7 245 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 POM121L12Q8N7R1 296 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 C15orf53Q8NAA6 179 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 NHLRC2Q8NBF2 726 aa6.84□□□□□ -1.31
CLK3-220ENST00000567992 C9orf85Q96MD7 179 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms