RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 BTN1A1Q13410 526 aa9.74□□□□□ -0.85
CLK3-218ENST00000566926 PRR27Q6MZM9 219 aa9.74□□□□□ -0.85
CLK3-218ENST00000566926 CSNK1G2-AS1Q8NCQ2 148 aa9.74□□□□□ -0.85
CLK3-218ENST00000566926 FAM19A4Q96LR4 140 aa9.74□□□□□ -0.85
CLK3-218ENST00000566926 FAM231BA6NCW3 169 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 A8MTW9 85 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 FABP5P3A8MUU1 101 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 GATCO43716 136 aaKnown RBP9.73□□□□□ -0.85
CLK3-218ENST00000566926 AMBPP02760 352 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 PFN1P07737 140 aaKnown RBP9.73□□□□□ -0.85
CLK3-218ENST00000566926 C11orf45Q8TAV5 145 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 GFRA4Q9GZZ7 299 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 RNASE7Q9H1E1 156 aaKnown RBP9.73□□□□□ -0.85
CLK3-218ENST00000566926 RPP21Q9H633 154 aaKnown RBP9.73□□□□□ -0.85
CLK3-218ENST00000566926 KLK5Q9Y337 293 aaPredicted RBP9.73□□□□□ -0.85
CLK3-218ENST00000566926 V9GYV3 84 aa9.73□□□□□ -0.85
CLK3-218ENST00000566926 SMIM9A6NGZ8 99 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 A8MWL6 223 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 F6UB75 175 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 SCO1O75880 301 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 DEFB1P60022 68 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 RPS20P60866 119 aaKnown RBP9.72□□□□□ -0.85
CLK3-218ENST00000566926 Q6AWC8 147 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 TMEM88Q6PEY1 159 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 CBLN2Q8IUK8 224 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 Q8NAQ8 132 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 NUDT10Q8NFP7 164 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 NUDT11Q96G61 164 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 C8orf49Q96NF6 230 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 NEU1Q99519 415 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 IL36BQ9NZH7 164 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 X6R8D5 127 aa9.72□□□□□ -0.85
CLK3-218ENST00000566926 TRAV21A0A0B4J279 112 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 IGHV4-28A0A0C4DH34 117 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 LCE6AA0A183 80 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 KLLNB2CW77 178 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 GPX1P07203 203 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 CEMP1Q6PRD7 247 aaPredicted RBP9.71□□□□□ -0.86
CLK3-218ENST00000566926 ZFAND2AQ8N6M9 145 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 TSKUQ8WUA8 353 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 GOLT1BQ9Y3E0 138 aa9.71□□□□□ -0.86
CLK3-218ENST00000566926 KMT2CQ8NEZ4 4911 aaKnown RBP9.7□□□□□ -0.86
CLK3-218ENST00000566926 TRBV24-1A0A075B6N3 115 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 DEFB4AO15263 64 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 SH2D1AO60880 128 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 ZNF705DP0CH99 300 aaPredicted RBP9.7□□□□□ -0.86
CLK3-218ENST00000566926 ZNF705BP0CI00 300 aaPredicted RBP9.7□□□□□ -0.86
CLK3-218ENST00000566926 CDKN1BP46527 198 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 FXYD7P58549 80 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 ZNF705AQ6ZN79 300 aaPredicted RBP9.7□□□□□ -0.86
CLK3-218ENST00000566926 PHLDA1Q8WV24 401 aaPredicted RBP9.7□□□□□ -0.86
CLK3-218ENST00000566926 NAT8BQ9UHF3 227 aa9.7□□□□□ -0.86
CLK3-218ENST00000566926 SMIM27A0A1W2PRY6 76 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 TMEM189A5PLL7 270 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 CXCL1P09341 107 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 RBMY1A1P0DJD3 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-218ENST00000566926 RBMY1CP0DJD4 496 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 CRIP1P50238 77 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 RBMY1FQ15415 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-218ENST00000566926 LINC01559Q495D7 138 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 OR2D3Q8NGH3 330 aa9.69□□□□□ -0.86
CLK3-218ENST00000566926 STARD9Q9P2P6 4700 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 A0A1W2PPQ1 181 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 C7orf71A4D174 169 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 NANOS2P60321 138 aaKnown RBP9.68□□□□□ -0.86
CLK3-218ENST00000566926 ELOBQ15370 118 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 AMTNQ6UX39 209 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 C20orf144Q9BQM9 153 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 TMEM208Q9BTX3 173 aa9.68□□□□□ -0.86
CLK3-218ENST00000566926 INSP01308 110 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 ORM1P02763 201 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 PRB4P10163 310 aaPredicted RBP9.67□□□□□ -0.86
CLK3-218ENST00000566926 ZNF80P51504 273 aaPredicted RBP9.67□□□□□ -0.86
CLK3-218ENST00000566926 FOXA3P55318 350 aaPredicted RBP9.67□□□□□ -0.86
CLK3-218ENST00000566926 COX19Q49B96 90 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 KCNS1Q96KK3 526 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 YPEL4Q96NS1 127 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 PYGO2Q9BRQ0 406 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 URGCP-MRPS24S4R325 110 aa9.67□□□□□ -0.86
CLK3-218ENST00000566926 TEX48A0A1B0GUV7 120 aa9.66□□□□□ -0.86
CLK3-218ENST00000566926 COLCA2A8K830 154 aa9.66□□□□□ -0.86
CLK3-218ENST00000566926 RNASE4P34096 147 aaKnown RBP9.66□□□□□ -0.86
CLK3-218ENST00000566926 SPINK13Q1W4C9 94 aa9.66□□□□□ -0.86
CLK3-218ENST00000566926 RASL11AQ6T310 242 aa9.66□□□□□ -0.86
CLK3-218ENST00000566926 ATP5L2Q7Z4Y8 100 aa9.66□□□□□ -0.86
CLK3-218ENST00000566926 HIGD1CA8MV81 97 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 F2Z2F3 143 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 M0R2Z0 102 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 TYMSP04818 313 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 SPART-AS1P0CW21 52 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 TCTAP57738 103 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 RRN3P1Q2M238 152 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 TDRG1Q3Y452 100 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 C1orf158Q8N1D5 194 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 TMEM256Q8N2U0 113 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 BORCS7Q96B45 105 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 FAM210BQ96KR6 192 aa9.65□□□□□ -0.86
CLK3-218ENST00000566926 TRAV10A0A0B4J240 114 aa9.64□□□□□ -0.87
CLK3-218ENST00000566926 A0A1B0GW15 77 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms