RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FAM231DQ6ZW35 169 aa14.91□□□□□ -0.02
CLN3-212ENST00000564574 C11orf21Q9P2W6 132 aa14.91□□□□□ -0.02
CLN3-212ENST00000564574 TRGV11A0A075B6L2 103 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 CBY3A6NI87 242 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 ZNF705GA8MUZ8 300 aaPredicted RBP14.9□□□□□ -0.02
CLN3-212ENST00000564574 ORM1P02763 201 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 ADCYAP1P18509 176 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 ADIRFQ15847 76 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 TMEM263Q8WUH6 116 aaKnown RBP14.9□□□□□ -0.02
CLN3-212ENST00000564574 C16orf74Q96GX8 76 aa14.9□□□□□ -0.02
CLN3-212ENST00000564574 IGKV3D-20A0A0C4DH25 116 aa14.89□□□□□ -0.03
CLN3-212ENST00000564574 P01737 135 aa14.89□□□□□ -0.03
CLN3-212ENST00000564574 HTN1P15515 57 aa14.89□□□□□ -0.03
CLN3-212ENST00000564574 IBA57Q5T440 356 aaKnown RBP14.89□□□□□ -0.03
CLN3-212ENST00000564574 TMEM189A5PLL7 270 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 B4DEV8 164 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 KRBOX1C9JBD0 128 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 C10orf91Q5T1B1 145 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 Q8NAQ8 132 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 NUDT10Q8NFP7 164 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 ISOC2Q96AB3 205 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 NUDT11Q96G61 164 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 DNAH9Q9NYC9 4486 aa14.88□□□□□ -0.03
CLN3-212ENST00000564574 TYMSP04818 313 aa14.87□□□□□ -0.03
CLN3-212ENST00000564574 CXCL1P09341 107 aa14.87□□□□□ -0.03
CLN3-212ENST00000564574 ERVFC1-1P60608 527 aa14.87□□□□□ -0.03
CLN3-212ENST00000564574 RPS20P60866 119 aaKnown RBP14.87□□□□□ -0.03
CLN3-212ENST00000564574 SLC7A5P1Q8MH63 180 aa14.87□□□□□ -0.03
CLN3-212ENST00000564574 RNASE8Q8TDE3 154 aaKnown RBP14.87□□□□□ -0.03
CLN3-212ENST00000564574 OSTCQ9NRP0 149 aa14.87□□□□□ -0.03
CLN3-212ENST00000564574 IGHV4-28A0A0C4DH34 117 aa14.86□□□□□ -0.03
CLN3-212ENST00000564574 M0R036 132 aa14.86□□□□□ -0.03
CLN3-212ENST00000564574 AZU1P20160 251 aa14.86□□□□□ -0.03
CLN3-212ENST00000564574 DNLZQ5SXM8 178 aa14.86□□□□□ -0.03
CLN3-212ENST00000564574 RNASE7Q9H1E1 156 aaKnown RBP14.86□□□□□ -0.03
CLN3-212ENST00000564574 C11orf68Q9H3H3 251 aaKnown RBP14.86□□□□□ -0.03
CLN3-212ENST00000564574 TP53TG3Q9ULZ0 132 aa14.86□□□□□ -0.03
CLN3-212ENST00000564574 CARHSP1Q9Y2V2 147 aaKnown RBP14.86□□□□□ -0.03
CLN3-212ENST00000564574 XKRY2A2RUG3 117 aa14.85□□□□□ -0.03
CLN3-212ENST00000564574 GATCO43716 136 aaKnown RBP14.85□□□□□ -0.03
CLN3-212ENST00000564574 PRM2P04554 102 aa14.85□□□□□ -0.03
CLN3-212ENST00000564574 ZNF415Q09FC8 603 aa14.85□□□□□ -0.03
CLN3-212ENST00000564574 C15orf54Q8N8G6 183 aa14.85□□□□□ -0.03
CLN3-212ENST00000564574 OR2D3Q8NGH3 330 aa14.85□□□□□ -0.03
CLN3-212ENST00000564574 RPP21Q9H633 154 aaKnown RBP14.85□□□□□ -0.03
CLN3-212ENST00000564574 IGHV3-16A0A0C4DH30 117 aa14.84□□□□□ -0.03
CLN3-212ENST00000564574 GNRH2O43555 120 aa14.84□□□□□ -0.03
CLN3-212ENST00000564574 ASIPP42127 132 aa14.84□□□□□ -0.03
CLN3-212ENST00000564574 C11orf72Q8NBR9 251 aa14.84□□□□□ -0.03
CLN3-212ENST00000564574 SFRP2Q96HF1 295 aa14.84□□□□□ -0.03
CLN3-212ENST00000564574 HUWE1Q7Z6Z7 4374 aaKnown RBP14.83□□□□□ -0.03
CLN3-212ENST00000564574 SNURFLB1AK76 121 aa14.83□□□□□ -0.04
CLN3-212ENST00000564574 TCL1AP56279 114 aa14.83□□□□□ -0.04
CLN3-212ENST00000564574 RPL19P84098 196 aaKnown RBP14.83□□□□□ -0.04
CLN3-212ENST00000564574 CT83Q5H943 113 aa14.83□□□□□ -0.04
CLN3-212ENST00000564574 OR10G8Q8NGN5 311 aa14.83□□□□□ -0.04
CLN3-212ENST00000564574 TMSB15BA0A087X1C1 80 aa14.82□□□□□ -0.04
CLN3-212ENST00000564574 PLAC8L1A1L4L8 177 aa14.82□□□□□ -0.04
CLN3-212ENST00000564574 S100A4P26447 101 aaKnown RBP14.82□□□□□ -0.04
CLN3-212ENST00000564574 MDFICQ9P1T7 246 aa14.82□□□□□ -0.04
CLN3-212ENST00000564574 MED14OSP0DP75 135 aa14.81□□□□□ -0.04
CLN3-212ENST00000564574 IL17DQ8TAD2 202 aa14.81□□□□□ -0.04
CLN3-212ENST00000564574 SPXQ9BT56 116 aa14.81□□□□□ -0.04
CLN3-212ENST00000564574 GSN-AS1Q9NRJ2 163 aa14.81□□□□□ -0.04
CLN3-212ENST00000564574 TIMM8BQ9Y5J9 83 aaPredicted RBP14.81□□□□□ -0.04
CLN3-212ENST00000564574 TEX48A0A1B0GUV7 120 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 GRIFINA4D1Z8 144 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 PPP1R2P9O14990 202 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 DAZ2Q13117 558 aaKnown RBP14.8□□□□□ -0.04
CLN3-212ENST00000564574 ZNF575Q86XF7 245 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 IL36BQ9NZH7 164 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 U3KQK5 164 aa14.8□□□□□ -0.04
CLN3-212ENST00000564574 LYRM9A8MSI8 78 aa14.79□□□□□ -0.04
CLN3-212ENST00000564574 A8MWL6 223 aa14.79□□□□□ -0.04
CLN3-212ENST00000564574 RNASE3P12724 160 aaKnown RBP14.79□□□□□ -0.04
CLN3-212ENST00000564574 ANAPC16Q96DE5 110 aa14.79□□□□□ -0.04
CLN3-212ENST00000564574 C9orf85Q96MD7 179 aa14.79□□□□□ -0.04
CLN3-212ENST00000564574 V9GYV3 84 aa14.79□□□□□ -0.04
CLN3-212ENST00000564574 NBEAL2Q6ZNJ1 2754 aa14.78□□□□□ -0.04
CLN3-212ENST00000564574 A0A0J9YWU9 116 aa14.78□□□□□ -0.04
CLN3-212ENST00000564574 DEFB4AO15263 64 aa14.78□□□□□ -0.04
CLN3-212ENST00000564574 MT-ND4LP03901 98 aa14.78□□□□□ -0.04
CLN3-212ENST00000564574 EMP1P54849 157 aa14.78□□□□□ -0.04
CLN3-212ENST00000564574 A0A1W2PPQ1 181 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 H3BVH4 76 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 APOC3P02656 99 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 ARMS2P0C7Q2 107 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 SVBPQ8N300 66 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 GFRA4Q9GZZ7 299 aa14.77□□□□□ -0.05
CLN3-212ENST00000564574 NOP10Q9NPE3 64 aaKnown RBP14.77□□□□□ -0.05
CLN3-212ENST00000564574 FAM231BA6NCW3 169 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 SNAI2O43623 268 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 SPINK4O60575 86 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 OR5AL1P0C617 328 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 IGLC6P0CF74 106 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 SPART-AS1P0CW21 52 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 LGALS9BQ3B8N2 356 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 RNF212Q495C1 297 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 TSKUQ8WUA8 353 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 PTH2Q96A98 100 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms