RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 KLK5Q9Y337 293 aaPredicted RBP10.24□□□□□ -0.77
LDLR-213ENST00000560502 URGCP-MRPS24S4R325 110 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 VPS13DQ5THJ4 4388 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 SMIM27A0A1W2PRY6 76 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 XKRY2A2RUG3 117 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 PRAC2D3DTV9 90 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 COX19Q49B96 90 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 Q6AWC8 147 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 OR8A1Q8NGG7 326 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 TSKUQ8WUA8 353 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 AGPAT4-IT1Q9H0P7 198 aa10.23□□□□□ -0.77
LDLR-213ENST00000560502 SAV1Q9H4B6 383 aaPredicted RBP10.23□□□□□ -0.77
LDLR-213ENST00000560502 OR4C46A6NHA9 309 aa10.22□□□□□ -0.77
LDLR-213ENST00000560502 FAM3BP58499 235 aaPredicted RBP10.22□□□□□ -0.77
LDLR-213ENST00000560502 RPS20P60866 119 aaKnown RBP10.22□□□□□ -0.77
LDLR-213ENST00000560502 MAP6D1Q9H9H5 199 aa10.22□□□□□ -0.77
LDLR-213ENST00000560502 DNAH6Q9C0G6 4158 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 IGKV3-7A0A075B6H7 116 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 TGIF2-C20orf24A0A0A6YYL0 155 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 A0A1W2PPQ1 181 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 DUSP14O95147 198 aaKnown RBP10.21□□□□□ -0.77
LDLR-213ENST00000560502 RPL35AP18077 110 aaKnown RBP10.21□□□□□ -0.77
LDLR-213ENST00000560502 CMC4P56277 68 aaPredicted RBP10.21□□□□□ -0.77
LDLR-213ENST00000560502 HIST1H1AQ02539 215 aaPredicted RBP10.21□□□□□ -0.77
LDLR-213ENST00000560502 LGALS9CQ6DKI2 356 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 RASL11AQ6T310 242 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 Q8TAT8 98 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 PHLDA1Q8WV24 401 aaPredicted RBP10.21□□□□□ -0.77
LDLR-213ENST00000560502 NAT8BQ9UHF3 227 aa10.21□□□□□ -0.77
LDLR-213ENST00000560502 HECTD4Q9Y4D8 3996 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 FABP5P3A8MUU1 101 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 CXCL1P09341 107 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 CRISP2P16562 243 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 ERCC8Q13216 396 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 EBLN2Q6P2I7 272 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 FOXI2Q6ZQN5 318 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 ATP5L2Q7Z4Y8 100 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 APRG1Q8IVJ8 170 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 FAM19A4Q96LR4 140 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 C8orf49Q96NF6 230 aa10.2□□□□□ -0.78
LDLR-213ENST00000560502 C1orf196B1AJZ1 125 aa10.19□□□□□ -0.78
LDLR-213ENST00000560502 SH2D1AO60880 128 aa10.19□□□□□ -0.78
LDLR-213ENST00000560502 ZNF688P0C7X2 276 aa10.19□□□□□ -0.78
LDLR-213ENST00000560502 PSMG4Q5JS54 123 aa10.19□□□□□ -0.78
LDLR-213ENST00000560502 OR2D3Q8NGH3 330 aa10.19□□□□□ -0.78
LDLR-213ENST00000560502 A0A0J9YX75 114 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 MT-ND6P03923 174 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 LEPP41159 167 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 RPS10P46783 165 aaKnown RBP10.18□□□□□ -0.78
LDLR-213ENST00000560502 TFPI2P48307 235 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 FOXA3P55318 350 aaPredicted RBP10.18□□□□□ -0.78
LDLR-213ENST00000560502 RAB5BP61020 215 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 WDR73Q6P4I2 378 aa10.18□□□□□ -0.78
LDLR-213ENST00000560502 C11orf68Q9H3H3 251 aaKnown RBP10.18□□□□□ -0.78
LDLR-213ENST00000560502 KIAA1109Q2LD37 5005 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 TMEM189A5PLL7 270 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 A8MTW9 85 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 TSPOP30536 169 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 CRIP1P50238 77 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 ZNF124Q15973 351 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 LINC01559Q495D7 138 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 CLUHP3Q96NS8 147 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 NEU1Q99519 415 aa10.17□□□□□ -0.78
LDLR-213ENST00000560502 TRAV21A0A0B4J279 112 aa10.16□□□□□ -0.78
LDLR-213ENST00000560502 A0A1B0GW15 77 aa10.16□□□□□ -0.78
LDLR-213ENST00000560502 HIGD1CA8MV81 97 aa10.16□□□□□ -0.78
LDLR-213ENST00000560502 ZFAND2AQ8N6M9 145 aa10.16□□□□□ -0.78
LDLR-213ENST00000560502 CSTL1Q9H114 145 aa10.16□□□□□ -0.78
LDLR-213ENST00000560502 TMA7Q9Y2S6 64 aaKnown RBP10.16□□□□□ -0.78
LDLR-213ENST00000560502 KLLNB2CW77 178 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 S100A8P05109 93 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 HLA-DRB4P13762 266 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 NANOS2P60321 138 aaKnown RBP10.15□□□□□ -0.78
LDLR-213ENST00000560502 NUP35Q8NFH5 326 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 BORCS7Q96B45 105 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 GNB1LQ9BYB4 327 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 HLA-DRB4X5D2U9 266 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 PCLOQ9Y6V0 5065 aa10.15□□□□□ -0.78
LDLR-213ENST00000560502 CA1P00915 261 aaPredicted RBP10.14□□□□□ -0.79
LDLR-213ENST00000560502 HLA-DQA1P01909 254 aa10.14□□□□□ -0.79
LDLR-213ENST00000560502 ZNF80P51504 273 aaPredicted RBP10.14□□□□□ -0.79
LDLR-213ENST00000560502 TCL1AP56279 114 aa10.14□□□□□ -0.79
LDLR-213ENST00000560502 C11orf45Q8TAV5 145 aa10.14□□□□□ -0.79
LDLR-213ENST00000560502 F6UB75 175 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 GPX1P07203 203 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 ZNF705DP0CH99 300 aaPredicted RBP10.13□□□□□ -0.79
LDLR-213ENST00000560502 ZNF705BP0CI00 300 aaPredicted RBP10.13□□□□□ -0.79
LDLR-213ENST00000560502 CTRLP40313 264 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 DEFB131AP59861 70 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 ACTL10Q5JWF8 245 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 OR11H2Q8NH07 326 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 GTSF1Q8WW33 167 aa10.13□□□□□ -0.79
LDLR-213ENST00000560502 A0A1B0GXF2 115 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 F2Z2F3 143 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 AMBPP02760 352 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 ORM1P02763 201 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 CDKN1BP46527 198 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 TCTAP57738 103 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 HBBP68871 147 aa10.12□□□□□ -0.79
LDLR-213ENST00000560502 RIGQ13278 110 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms