RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DIRC3C9JPN6 131 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 PEX7O00628 323 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 PRM2P04554 102 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 SLC25A5P05141 298 aaKnown RBP6.7□□□□□ -1.34
LDLR-211ENST00000560173 CRISP2P16562 243 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 EMP1P54849 157 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 UBE2G1P62253 170 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 TMEM78Q5T7P6 136 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 C2CD4CQ8TF44 421 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 FMC1Q96HJ9 113 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 LINC01587Q99440 93 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 EPDR1Q9UM22 224 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 TRBV7-9A0A0J9YWB2 115 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 TRBV6-1A0A0K0K1D8 114 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 TEX48A0A1B0GUV7 120 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 C7orf71A4D174 169 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 COLCA2A8K830 154 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 C1orf196B1AJZ1 125 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 J3KRW8 73 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 SPART-AS1P0CW21 52 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 AZU1P20160 251 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 ZNF138P52744 262 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 RAB5BP61020 215 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 TMEM183BQ1AE95 376 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 C12orf74Q32Q52 190 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 FAM222AQ5U5X8 452 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 Q6ZTC4 211 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 ZFAND2AQ8N6M9 145 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 Q8TAT8 98 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 ISOC2Q96AB3 205 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 SFRP2Q96HF1 295 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 ZNF492Q9P255 531 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 DKK2Q9UBU2 259 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 KLK5Q9Y337 293 aaPredicted RBP6.69□□□□□ -1.34
LDLR-211ENST00000560173 KLF12Q9Y4X4 402 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 PCLOQ9Y6V0 5065 aa6.69□□□□□ -1.34
LDLR-211ENST00000560173 TRBV24-1A0A075B6N3 115 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 TRAV12-3A0A0B4J271 114 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 PLAC8L1A1L4L8 177 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 RAB5AP20339 215 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 FLI1Q01543 452 aaPredicted RBP6.68□□□□□ -1.34
LDLR-211ENST00000560173 CENPWQ5EE01 88 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 PRR9Q5T870 116 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 GOLT1AQ6ZVE7 132 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 OR10G8Q8NGN5 311 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 OSTCQ9NRP0 149 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 RPH3ALQ9UNE2 315 aa6.68□□□□□ -1.34
LDLR-211ENST00000560173 TRAV10A0A0B4J240 114 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 TMEM238LA0A1B0GVL6 79 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 ZNF324O75467 553 aaPredicted RBP6.67□□□□□ -1.34
LDLR-211ENST00000560173 TCRAP04437 139 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 HTN1P15515 57 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 RNASE4P34096 147 aaKnown RBP6.67□□□□□ -1.34
LDLR-211ENST00000560173 GNG5P63218 68 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 ELOBQ15370 118 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 COX19Q49B96 90 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 ZNF493Q6ZR52 646 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 BAGE2Q86Y30 109 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 OCC1Q8TAD7 63 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 RNASE8Q8TDE3 154 aaKnown RBP6.67□□□□□ -1.34
LDLR-211ENST00000560173 TMEM263Q8WUH6 116 aaKnown RBP6.67□□□□□ -1.34
LDLR-211ENST00000560173 C16orf74Q96GX8 76 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 PYGO2Q9BRQ0 406 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 DERL1Q9BUN8 251 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 ZFP30Q9Y2G7 519 aa6.67□□□□□ -1.34
LDLR-211ENST00000560173 TRBV20OR9-2A0A075B6H5 130 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 TRAV8-1A0A0A6YYK1 113 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 LYRM9A8MSI8 78 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 GCGP01275 180 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 GPX1P07203 203 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 ERVFC1-1P60608 527 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 FAM231DQ6ZW35 169 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 TMEM75Q8N9X5 138 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 FAM210BQ96KR6 192 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 YPEL4Q96NS1 127 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 LINC00467Q9BRT7 94 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 LENEPQ9Y5L5 61 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 FRAS1Q86XX4 4008 aa6.66□□□□□ -1.34
LDLR-211ENST00000560173 VPS13DQ5THJ4 4388 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 DEFB131BA0A096LNP1 70 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 PFN1P07737 140 aaKnown RBP6.65□□□□□ -1.34
LDLR-211ENST00000560173 RPS10P46783 165 aaKnown RBP6.65□□□□□ -1.34
LDLR-211ENST00000560173 FAM3BP58499 235 aaPredicted RBP6.65□□□□□ -1.34
LDLR-211ENST00000560173 DAD1P61803 113 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 Q6ZQT7 251 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 IL36BQ9NZH7 164 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 URGCP-MRPS24S4R325 110 aa6.65□□□□□ -1.34
LDLR-211ENST00000560173 HERC2O95714 4834 aa6.65□□□□□ -1.35
LDLR-211ENST00000560173 A6NJY4 79 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 LTAP01374 205 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 S100A6P06703 90 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 MGST1P10620 155 aaKnown RBP6.64□□□□□ -1.35
LDLR-211ENST00000560173 TCTAP57738 103 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 ANXA2RQ3ZCQ2 193 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 CT83Q5H943 113 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 SAPCD1Q5SSQ6 148 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 IBA57Q5T440 356 aaKnown RBP6.64□□□□□ -1.35
LDLR-211ENST00000560173 Q6AWC8 147 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 C11orf72Q8NBR9 251 aa6.64□□□□□ -1.35
LDLR-211ENST00000560173 LINC00476Q8WZB0 136 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms