RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 A0A1W2PRX2 142 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 EDN2P20800 178 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 TCTEX1D4Q5JR98 221 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 WFDC3Q8IUB2 231 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 CD28P10747 220 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 MIEN1Q9BRT3 115 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 CNFNQ9BYD5 112 aa12.68□□□□□ -0.38
LDLR-206ENST00000557958 GPX1P07203 203 aa12.67□□□□□ -0.38
LDLR-206ENST00000557958 SLURP1P55000 103 aa12.67□□□□□ -0.38
LDLR-206ENST00000557958 DEFB136Q30KP8 78 aa12.67□□□□□ -0.38
LDLR-206ENST00000557958 VAMP8Q9BV40 100 aa12.67□□□□□ -0.38
LDLR-206ENST00000557958 K7EQG2 157 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 TWIST1Q15672 202 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 DMRTA1Q5VZB9 504 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 ZFAND2AQ8N6M9 145 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 OR9G4Q8NGQ1 327 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 FAM19A4Q96LR4 140 aa12.66□□□□□ -0.38
LDLR-206ENST00000557958 ZNF324O75467 553 aaPredicted RBP12.65□□□□□ -0.38
LDLR-206ENST00000557958 NDUFA7O95182 113 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 TFPI2P48307 235 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 AMTP48728 403 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 RCHY1Q96PM5 261 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 DUX3Q96PT4 197 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 IGKV3D-20A0A0C4DH25 116 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 HSBP1O75506 76 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 PSMG4Q5JS54 123 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 EBLN2Q6P2I7 272 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 ODF3Q96PU9 254 aa12.65□□□□□ -0.38
LDLR-206ENST00000557958 F6UB75 175 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 ZNF688P0C7X2 276 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 NTF3P20783 257 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 APRG1Q8IVJ8 170 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 Q8N976 141 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 SELENOKQ9Y6D0 94 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 NF1P21359 2839 aa12.64□□□□□ -0.39
LDLR-206ENST00000557958 TRAV2A0A0B4J234 112 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 FAM104BQ5XKR9 115 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 RNASEKQ6P5S7 137 aaKnown RBP12.63□□□□□ -0.39
LDLR-206ENST00000557958 CITED2Q99967 270 aaPredicted RBP12.63□□□□□ -0.39
LDLR-206ENST00000557958 DUSP14O95147 198 aaKnown RBP12.63□□□□□ -0.39
LDLR-206ENST00000557958 OR5AL1P0C617 328 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 CD33P20138 364 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 PMCHP20382 165 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 LEPP41159 167 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 CACNG7P62955 275 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 ZNF705AQ6ZN79 300 aaPredicted RBP12.63□□□□□ -0.39
LDLR-206ENST00000557958 SMIM15Q7Z3B0 74 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 DYNLRB2Q8TF09 96 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 CHCHD1Q96BP2 118 aaKnown RBP12.63□□□□□ -0.39
LDLR-206ENST00000557958 TMEM191AQ9H0A3 160 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 C11orf21Q9P2W6 132 aa12.63□□□□□ -0.39
LDLR-206ENST00000557958 NSD1Q96L73 2696 aaPredicted RBP12.62□□□□□ -0.39
LDLR-206ENST00000557958 J3KRW8 73 aa12.62□□□□□ -0.39
LDLR-206ENST00000557958 RNASE4P34096 147 aaKnown RBP12.62□□□□□ -0.39
LDLR-206ENST00000557958 PRR9Q5T870 116 aa12.62□□□□□ -0.39
LDLR-206ENST00000557958 DEFB1P60022 68 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 ZNF124Q15973 351 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 ZNF575Q86XF7 245 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.61□□□□□ -0.39
LDLR-206ENST00000557958 PAM16Q9Y3D7 125 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 TSSC4Q9Y5U2 329 aaPredicted RBP12.61□□□□□ -0.39
LDLR-206ENST00000557958 A0A0J9YX75 114 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 KLLNB2CW77 178 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 TSPOP30536 169 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 PROK1P58294 105 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 NIT1Q86X76 327 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 ORMDL3Q8N138 153 aa12.61□□□□□ -0.39
LDLR-206ENST00000557958 DLX4Q92988 240 aaPredicted RBP12.61□□□□□ -0.39
LDLR-206ENST00000557958 MUC21A0A0G2JKD1 596 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 MUC21A0A140T8X8 626 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 SNAI2O43623 268 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 ASIPP42127 132 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 KRTDAPP60985 99 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 TDRG1Q3Y452 100 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 PRR31Q5SQ13 230 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 MUC21Q5SSG8 566 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 FOXI2Q6ZQN5 318 aa12.6□□□□□ -0.39
LDLR-206ENST00000557958 PPBPP02775 128 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 MED14OSP0DP75 135 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 S100A4P26447 101 aaKnown RBP12.59□□□□□ -0.39
LDLR-206ENST00000557958 NSUN5P1Q3KNT7 163 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 SPANXN1Q5VSR9 72 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 ADAMTSL5Q6ZMM2 481 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 AMN1Q8IY45 258 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 M0R2Z0 102 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 LINC00614P0C842 121 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 U3KQK5 164 aa12.59□□□□□ -0.39
LDLR-206ENST00000557958 IGHV4-4A0A075B6R2 117 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 D6R8Y8 96 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 CCL24O00175 119 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 CSN3P07498 182 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 FHL3Q13643 280 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 RAX2Q96IS3 184 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 PRELID3AQ96N28 172 aa12.58□□□□□ -0.4
LDLR-206ENST00000557958 H3BVH4 76 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 CKS2P33552 79 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 GAGE1Q13065 139 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 MRPL51Q4U2R6 128 aaKnown RBP12.57□□□□□ -0.4
LDLR-206ENST00000557958 LAMTOR2Q9Y2Q5 125 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 C7orf71A4D174 169 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms