RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KCNS1Q96KK3 526 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 TXNDC17Q9BRA2 123 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 ZFP30Q9Y2G7 519 aa9.63□□□□□ -0.87
SHMT2-228ENST00000557302 IGHV4-4A0A075B6R2 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 TRBV6-1A0A0K0K1D8 114 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 GAGE12BA1L429 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 GAGE7O76087 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 ATP5G1P05496 136 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 S100A9P06702 114 aaKnown RBP9.62□□□□□ -0.87
SHMT2-228ENST00000557302 GAGE12FP0CL80 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 GAGE12GP0CL81 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 GAGE12IP0CL82 117 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 BLOC1S1P78537 153 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 Q6ZTI0 123 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 SDF2L1Q9HCN8 221 aa9.62□□□□□ -0.87
SHMT2-228ENST00000557302 TRGV1A0A0A0MS02 117 aa9.61□□□□□ -0.87
SHMT2-228ENST00000557302 LTAP01374 205 aa9.61□□□□□ -0.87
SHMT2-228ENST00000557302 FAM210BQ96KR6 192 aa9.61□□□□□ -0.87
SHMT2-228ENST00000557302 NDUFAF3Q9BU61 184 aa9.61□□□□□ -0.87
SHMT2-228ENST00000557302 APLNQ9ULZ1 77 aa9.61□□□□□ -0.87
SHMT2-228ENST00000557302 ALMS1Q8TCU4 4167 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 TRGV2A0A075B6R0 118 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 GNRH2O43555 120 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 SPINK4O60575 86 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 TYMSP04818 313 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 BCL2P10415 239 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 MEF2BQ02080 365 aaPredicted RBP9.6□□□□□ -0.87
SHMT2-228ENST00000557302 LGALS9BQ3B8N2 356 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 COX8CQ7Z4L0 72 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 LINC00476Q8WZB0 136 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 C11orf52Q96A22 123 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 ZC2HC1AQ96GY0 325 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 SPXQ9BT56 116 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 MDFICQ9P1T7 246 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 DNAH1Q9P2D7 4330 aa9.6□□□□□ -0.87
SHMT2-228ENST00000557302 IGHV3-16A0A0C4DH30 117 aa9.59□□□□□ -0.87
SHMT2-228ENST00000557302 FABP5P3A8MUU1 101 aa9.59□□□□□ -0.87
SHMT2-228ENST00000557302 F5H768 121 aa9.59□□□□□ -0.87
SHMT2-228ENST00000557302 TAGLN2P37802 199 aaKnown RBP9.59□□□□□ -0.87
SHMT2-228ENST00000557302 MRPL16Q9NX20 251 aaKnown RBP9.59□□□□□ -0.87
SHMT2-228ENST00000557302 PDE6DO43924 150 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 LY6G6CO95867 125 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 FAM162BQ5T6X4 162 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 TMEM88Q6PEY1 159 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 BAGE2Q86Y30 109 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 C18orf15Q96N68 181 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 VAX2Q9UIW0 290 aa9.58□□□□□ -0.88
SHMT2-228ENST00000557302 SH2D1AO60880 128 aa9.57□□□□□ -0.88
SHMT2-228ENST00000557302 RPL35P42766 123 aaKnown RBP9.57□□□□□ -0.88
SHMT2-228ENST00000557302 CRIP1P50238 77 aa9.57□□□□□ -0.88
SHMT2-228ENST00000557302 LGALS9CQ6DKI2 356 aa9.57□□□□□ -0.88
SHMT2-228ENST00000557302 NHLRC2Q8NBF2 726 aa9.57□□□□□ -0.88
SHMT2-228ENST00000557302 M0R2P5 195 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 ORM1P02763 201 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 OR5I1Q13606 314 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 ZNF674Q2M3X9 581 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 LYPD6BQ8NI32 183 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 DERL1Q9BUN8 251 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 MED9Q9NWA0 146 aa9.56□□□□□ -0.88
SHMT2-228ENST00000557302 EPPK1P58107 5090 aaKnown RBP9.55□□□□□ -0.88
SHMT2-228ENST00000557302 IGKV3D-20A0A0C4DH25 116 aa9.55□□□□□ -0.88
SHMT2-228ENST00000557302 B4DEV8 164 aa9.55□□□□□ -0.88
SHMT2-228ENST00000557302 C15orf53Q8NAA6 179 aa9.55□□□□□ -0.88
SHMT2-228ENST00000557302 RASL10AQ92737 203 aa9.55□□□□□ -0.88
SHMT2-228ENST00000557302 RBFOX3A6NFN3 312 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 M0R036 132 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 IGHV3-53P01767 116 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 HOXA5P20719 270 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 S100A4P26447 101 aaKnown RBP9.54□□□□□ -0.88
SHMT2-228ENST00000557302 ASIPP42127 132 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 CENPWQ5EE01 88 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 TEX261Q6UWH6 196 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 MLST8Q9BVC4 326 aa9.54□□□□□ -0.88
SHMT2-228ENST00000557302 TRAV26-1A0A087WT03 109 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 KRBOX1C9JBD0 128 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 P0DMU3 169 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 FAM231AP0DMU4 169 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 FAM231CP0DMU5 169 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 RNASE3P12724 160 aaKnown RBP9.53□□□□□ -0.88
SHMT2-228ENST00000557302 LINC01559Q495D7 138 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 ZNF506Q5JVG8 444 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 PRR27Q6MZM9 219 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 C9orf85Q96MD7 179 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 VPS13DQ5THJ4 4388 aa9.53□□□□□ -0.88
SHMT2-228ENST00000557302 RAB19A4D1S5 217 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 C9JCJ5 164 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 NUDT3O95989 172 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 GNG4P50150 75 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 ZNF876PQ49A33 203 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 TOR2AQ5JU69 321 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 MUC4Q99102 2169 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 HYDINQ4G0P3 5121 aa9.52□□□□□ -0.89
SHMT2-228ENST00000557302 TMSB15BA0A087X1C1 80 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 TRAV4A0A0B4J268 109 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 A0A0J9YY99 117 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 GRIFINA4D1Z8 144 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 TMEM250H0YL14 139 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 OR4C5Q8NGB2 326 aa9.51□□□□□ -0.89
SHMT2-228ENST00000557302 PTH2Q96A98 100 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms