RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 C20orf173Q96LM9 149 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 EPDR1Q9UM22 224 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 UBR4Q5T4S7 5183 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 SERTM2A0A1B0GWG4 89 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 SMIM9A6NGZ8 99 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 GGTLC3B5MD39 225 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 DIRC3C9JPN6 131 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 H3BMM0 161 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 M0R3E3 92 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 PDE6DO43924 150 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 DUSP14O95147 198 aaKnown RBP6.52□□□□□ -1.37
SYNE2-224ENST00000557024 IGKV3-20P01619 116 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 CNN1P51911 297 aaKnown RBP6.52□□□□□ -1.37
SYNE2-224ENST00000557024 DAD1P61803 113 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 UBE2G1P62253 170 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 GNG5P63218 68 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 HIST1H1AQ02539 215 aaPredicted RBP6.52□□□□□ -1.37
SYNE2-224ENST00000557024 FOXI2Q6ZQN5 318 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 GOLT1AQ6ZVE7 132 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 COMMD7Q86VX2 200 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 ARL6IP6Q8N6S5 226 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 OR4B1Q8NGF8 309 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 SVIPQ8NHG7 77 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 FRZBQ92765 325 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 HIST1H2BAQ96A08 127 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 TCEAL7Q9BRU2 100 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 MED9Q9NWA0 146 aa6.52□□□□□ -1.37
SYNE2-224ENST00000557024 FLG2Q5D862 2391 aaPredicted RBP6.52□□□□□ -1.37
SYNE2-224ENST00000557024 RAB19A4D1S5 217 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 PEX7O00628 323 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 NUDT3O95989 172 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 TCRAP04437 139 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 PRB4P10163 310 aaPredicted RBP6.51□□□□□ -1.37
SYNE2-224ENST00000557024 LINC00310P59036 64 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 TMEM78Q5T7P6 136 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 CYB561D1Q8N8Q1 229 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 OR8A1Q8NGG7 326 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 KRTAP1-5Q9BYS1 174 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 SMDT1Q9H4I9 107 aa6.51□□□□□ -1.37
SYNE2-224ENST00000557024 IGKV2-40A0A087WW87 121 aaPredicted RBP6.5□□□□□ -1.37
SYNE2-224ENST00000557024 RBAKDNA6NC62 111 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 LINC00862A6NCI5 91 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 NPIPB6E9PJ23 425 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 F6UB75 175 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 IGKV2D-40P01614 121 aaPredicted RBP6.5□□□□□ -1.37
SYNE2-224ENST00000557024 S100A9P06702 114 aaKnown RBP6.5□□□□□ -1.37
SYNE2-224ENST00000557024 FUSP35637 526 aaKnown RBP eCLIP6.5□□□□□ -1.37
SYNE2-224ENST00000557024 CCL18P55774 89 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 XGP55808 180 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 DEFB1P60022 68 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 NDUFA5Q16718 116 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 ZNF674Q2M3X9 581 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 LINC00477Q96M19 166 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 NDFIP1Q9BT67 221 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 SAV1Q9H4B6 383 aaPredicted RBP6.5□□□□□ -1.37
SYNE2-224ENST00000557024 MDFICQ9P1T7 246 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 LINC00588Q9Y4M8 146 aa6.5□□□□□ -1.37
SYNE2-224ENST00000557024 TRAV34A0A0B4J273 112 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 A0A0J9YX75 114 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 FBLL1A6NHQ2 334 aaKnown RBP6.49□□□□□ -1.37
SYNE2-224ENST00000557024 PRAC2D3DTV9 90 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 TMEM250H0YL14 139 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 NDUFS6O75380 124 aaKnown RBP6.49□□□□□ -1.37
SYNE2-224ENST00000557024 HLA-DRB4P13762 266 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 FLI1Q01543 452 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-224ENST00000557024 ERCC8Q13216 396 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 RNF151Q2KHN1 245 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 GDF5OSQ5U4N7 250 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 UQCC3Q6UW78 93 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 PRNTQ86SH4 94 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 CCDC28AQ8IWP9 274 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 TMEM75Q8N9X5 138 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 FMC1Q96HJ9 113 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 SGK494Q96LW2 274 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 PSG8Q9UQ74 426 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 HLA-DRB4X5D2U9 266 aa6.49□□□□□ -1.37
SYNE2-224ENST00000557024 VPS13BQ7Z7G8 4022 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 SRP19P09132 144 aaKnown RBP6.48□□□□□ -1.37
SYNE2-224ENST00000557024 BTF3P20290 206 aaKnown RBP6.48□□□□□ -1.37
SYNE2-224ENST00000557024 TSPOP30536 169 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 TAS2R60P59551 318 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 TMEM183BQ1AE95 376 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 C9orf47Q6ZRZ4 202 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 C11orf52Q96A22 123 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 VGLL1Q99990 258 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 SLC35B3Q9H1N7 401 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 GOLT1BQ9Y3E0 138 aa6.48□□□□□ -1.37
SYNE2-224ENST00000557024 TRAV8-1A0A0A6YYK1 113 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 KRTAP4-8A0A0G2JLE6 195 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 ZNF727A8MUV8 499 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 F5H768 121 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 J3KRW8 73 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 SMR3BP02814 79 aaPredicted RBP6.47□□□□□ -1.37
SYNE2-224ENST00000557024 GYPEP15421 78 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 MALP21145 153 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 LEPP41159 167 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 ZNF138P52744 262 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 RRN3P1Q2M238 152 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 TTC32Q5I0X7 151 aa6.47□□□□□ -1.37
SYNE2-224ENST00000557024 SAPCD1Q5SSQ6 148 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms