RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-226ENST00000556825 A0A1W2PPZ6 126 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 DKK1O94907 266 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 FAM27E3Q08E93 113 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 Q6ZT83 130 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 PRIMA1Q86XR5 153 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 LINC00311Q8N616 119 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 SSUH2Q9Y2M2 353 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 IL17RELQ6ZVW7 336 aa10.6□□□□□ -0.71
SHMT2-226ENST00000556825 TRBV7-1A0A0A6YYK4 115 aa10.6□□□□□ -0.71
SHMT2-226ENST00000556825 WNT9BO14905 357 aa10.6□□□□□ -0.71
SHMT2-226ENST00000556825 TFF1P04155 84 aa10.6□□□□□ -0.71
SHMT2-226ENST00000556825 PSMB8P28062 276 aa10.6□□□□□ -0.71
SHMT2-226ENST00000556825 RPL18AQ02543 176 aaKnown RBP10.6□□□□□ -0.71
SHMT2-226ENST00000556825 FER1L5A0AVI2 2057 aa10.59□□□□□ -0.71
SHMT2-226ENST00000556825 GRPP07492 148 aa10.59□□□□□ -0.71
SHMT2-226ENST00000556825 LIFP15018 202 aa10.59□□□□□ -0.71
SHMT2-226ENST00000556825 HOXA4Q00056 320 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-226ENST00000556825 EEF1AKMT3Q96AZ1 226 aa10.59□□□□□ -0.71
SHMT2-226ENST00000556825 IGHV1-45A0A0A0MS14 117 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 IGHV3-64DA0A0J9YX35 117 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 TMEM223A0PJW6 202 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 ZNF503-AS2A6NEH8 195 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 IGHV3-9P01782 118 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 EGR2P11161 476 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-226ENST00000556825 NSUN5P1Q3KNT7 163 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 MAFAQ8NHW3 353 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-226ENST00000556825 TOMM6Q96B49 74 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 EPM2AB3EWF7 344 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 NDUFC2-KCTD14E9PQ53 114 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 CD40P25942 277 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 COX8CQ7Z4L0 72 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 NRACQ8N912 160 aa10.58□□□□□ -0.72
SHMT2-226ENST00000556825 TRBV19A0A075B6N1 114 aa10.57□□□□□ -0.72
SHMT2-226ENST00000556825 SAA2P0DJI9 122 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-226ENST00000556825 LYPD1Q8N2G4 141 aa10.57□□□□□ -0.72
SHMT2-226ENST00000556825 SAP25Q8TEE9 199 aa10.57□□□□□ -0.72
SHMT2-226ENST00000556825 PEMTQ9UBM1 199 aa10.57□□□□□ -0.72
SHMT2-226ENST00000556825 ASCC3Q8N3C0 2202 aaKnown RBP10.57□□□□□ -0.72
SHMT2-226ENST00000556825 ERCC8Q13216 396 aa10.57□□□□□ -0.72
SHMT2-226ENST00000556825 C14orf178Q8N769 122 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-226ENST00000556825 MDS2Q8NDY4 140 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 INTS1Q8N201 2190 aaKnown RBP10.56□□□□□ -0.72
SHMT2-226ENST00000556825 CXCL13O43927 109 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 COX6CP09669 75 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 SAA1P0DJI8 122 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-226ENST00000556825 ORMDL2Q53FV1 153 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 PAPPA-AS1Q5QFB9 102 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 ZNF575Q86XF7 245 aa10.56□□□□□ -0.72
SHMT2-226ENST00000556825 COL6A3P12111 3177 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 LST1O00453 97 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 MUSTN1Q8IVN3 82 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 DCANP1Q8TF63 244 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 AMELXQ99217 191 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 SIRPDQ9H106 197 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 ICOSQ9Y6W8 199 aa10.55□□□□□ -0.72
SHMT2-226ENST00000556825 NBR2O15453 112 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 SPRY2O43597 315 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 NPC2P61916 151 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 WT1-ASQ06250 92 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 PLGLAQ15195 96 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 RHOHQ15669 191 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 DEFB126Q9BYW3 111 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 TRAV12-2A0A075B6T6 113 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 TSPEAR-AS2P59090 65 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 PMS2CLQ68D20 193 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 C17orf77Q96MU5 243 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 KLK15Q9H2R5 256 aa10.54□□□□□ -0.72
SHMT2-226ENST00000556825 E7EUB6 86 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 IGKV1-16P04430 117 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 ZNF826PQ6ZT77 177 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 C11orf86A6NJI1 115 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 NDUFC2O95298 119 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 PRB4P10163 310 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-226ENST00000556825 RUSC1-AS1Q66K80 236 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 GGNQ86UU5 652 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 PSMG3-AS1Q96PY0 264 aa10.53□□□□□ -0.72
SHMT2-226ENST00000556825 TMEM178BH3BS89 294 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 MRPL33O75394 65 aaKnown RBP10.52□□□□□ -0.73
SHMT2-226ENST00000556825 SYNJ2BPP57105 145 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 FAM216BQ8N7L0 139 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 LEAP2Q969E1 77 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 C16orf95Q9H693 158 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 DYNLRB1Q9NP97 96 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 SERP1Q9Y6X1 66 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 B3GALT5-AS1P59052 145 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 LINC01561Q8N1V8 128 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 C20orf173Q96LM9 149 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 SMIM2Q9BVW6 85 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 TP53TG1Q9Y2A0 90 aa10.52□□□□□ -0.73
SHMT2-226ENST00000556825 AVPP01185 164 aa10.51□□□□□ -0.73
SHMT2-226ENST00000556825 UBE2E1P51965 193 aa10.51□□□□□ -0.73
SHMT2-226ENST00000556825 CD177Q8N6Q3 437 aa10.51□□□□□ -0.73
SHMT2-226ENST00000556825 SCNM1Q9BWG6 230 aa10.51□□□□□ -0.73
SHMT2-226ENST00000556825 IGLV4-69A0A075B6H9 119 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 CGB1A6NKQ9 187 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 LYZP61626 148 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 C6orf226Q5I0X4 101 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 TMEM200BQ69YZ2 307 aa10.5□□□□□ -0.73
SHMT2-226ENST00000556825 CXorf67Q86X51 503 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms