RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 RNF125Q96EQ8 232 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 TXN2Q99757 166 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 TMEM70Q9BUB7 260 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 ST20Q9HBF5 79 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 DLEU1O43261 78 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 HNRNPA3P51991 378 aaKnown RBP8.6□□□□□ -1.03
VPS33B-204ENST00000554660 MFAP4P55083 255 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 PSG9Q00887 426 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 PLGLAQ15195 96 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 ZNF124Q15973 351 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 PSG3Q16557 428 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 TDRG1Q3Y452 100 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 UNQ5815/PRO19632Q6UWF5 114 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 ZNF493Q6ZR52 646 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 TTC9CQ8N5M4 171 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 THYN1Q9P016 225 aa8.6□□□□□ -1.03
VPS33B-204ENST00000554660 IGLV11-55A0A075B6I3 123 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.59□□□□□ -1.03
VPS33B-204ENST00000554660 A0A1B0GUT8 65 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 CHEK1O14757 476 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 CNIH1O95406 144 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 IGHV3-48P01763 117 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 NTF3P20783 257 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 RPS20P60866 119 aaKnown RBP8.59□□□□□ -1.03
VPS33B-204ENST00000554660 RNASEKQ6P5S7 137 aaKnown RBP8.59□□□□□ -1.03
VPS33B-204ENST00000554660 PET117Q6UWS5 81 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 ZNF562Q6V9R5 426 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 LINC00322Q6ZN03 302 aaPredicted RBP8.59□□□□□ -1.03
VPS33B-204ENST00000554660 SPATA12Q7Z6I5 190 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 AAMDCQ9H7C9 122 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 PPP1R14DQ9NXH3 145 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 HSPB8Q9UJY1 196 aa8.59□□□□□ -1.03
VPS33B-204ENST00000554660 TRGV3P03979 118 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 RPL7P18124 248 aaKnown RBP8.58□□□□□ -1.04
VPS33B-204ENST00000554660 CAMPP49913 170 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 SAPCD1Q5SSQ6 148 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 EBLN2Q6P2I7 272 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 GOLT1AQ6ZVE7 132 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 TCF24Q7RTU0 167 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 GTSCR1Q86UQ5 136 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 FAM19A2Q8N3H0 131 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 OR2D3Q8NGH3 330 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 URB1-AS1Q96HZ7 61 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 ZNF414Q96IQ9 312 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 TMEM191AQ9H0A3 160 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 MS4A6AQ9H2W1 248 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 PSG8Q9UQ74 426 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 LAMTOR2Q9Y2Q5 125 aa8.58□□□□□ -1.04
VPS33B-204ENST00000554660 NDUFB8O95169 186 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 CT45A10P0DMU9 189 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 TSPOP30536 169 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 CSN1S1P47710 185 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 SYNJ2BPP57105 145 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 Q6ZN92 141 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 OR9G4Q8NGQ1 327 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 IL17DQ8TAD2 202 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 LINC00476Q8WZB0 136 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 PGLYRP4Q96LB8 373 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 ATP6V0BQ99437 205 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 TMEM208Q9BTX3 173 aa8.57□□□□□ -1.04
VPS33B-204ENST00000554660 IGHV1-24A0A0C4DH33 117 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 RBMY1BA6NDE4 496 aaKnown RBP8.56□□□□□ -1.04
VPS33B-204ENST00000554660 RBMY1EA6NEQ0 496 aaKnown RBP8.56□□□□□ -1.04
VPS33B-204ENST00000554660 SYS1-DBNDD2H3BUS1 97 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 GNG7O60262 68 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 LEPROTL1O95214 131 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 RBMY1DP0C7P1 496 aaKnown RBP8.56□□□□□ -1.04
VPS33B-204ENST00000554660 ZNF25P17030 456 aaPredicted RBP8.56□□□□□ -1.04
VPS33B-204ENST00000554660 PSMG4Q5JS54 123 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 LCN12Q6JVE5 192 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 PRNTQ86SH4 94 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 ORAOV1Q8WV07 137 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 PMCHL2Q9BQD1 86 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 SSBP4Q9BWG4 385 aaPredicted RBP8.56□□□□□ -1.04
VPS33B-204ENST00000554660 WFDC10AQ9H1F0 79 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 RPH3ALQ9UNE2 315 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 GOLT1BQ9Y3E0 138 aa8.56□□□□□ -1.04
VPS33B-204ENST00000554660 BRI3O95415 125 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 LY6G6CO95867 125 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 TRBV12-3P01733 135 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 IL4P05112 153 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 ZC2HC1AQ96GY0 325 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 FANCD2OSQ96PS1 177 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 MAP1LC3CQ9BXW4 147 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 C21orf62Q9NYP8 219 aa8.55□□□□□ -1.04
VPS33B-204ENST00000554660 A0A087X0K7 114 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 RBAKDNA6NC62 111 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 OR4C46A6NHA9 309 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 ZNF785A8K8V0 405 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 HSBP1L1C9JCN9 74 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 CSN3P07498 182 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 BMI1P35226 326 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 LINC01559Q495D7 138 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 LEMD1Q68G75 181 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 EXOC3-AS1Q8N2X6 119 aa8.54□□□□□ -1.04
VPS33B-204ENST00000554660 KIAA1109Q2LD37 5005 aa8.53□□□□□ -1.04
VPS33B-204ENST00000554660 F8W735 103 aaPredicted RBP8.53□□□□□ -1.04
VPS33B-204ENST00000554660 CD7P09564 240 aa8.53□□□□□ -1.04
VPS33B-204ENST00000554660 Q56UQ5 140 aa8.53□□□□□ -1.04
VPS33B-204ENST00000554660 LINC01545Q5VT33 79 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms