RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SLC25A31Q9H0C2 315 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 ZNF331Q9NQX6 463 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-204ENST00000549064 SSR3Q9UNL2 185 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 HIGD1AQ9Y241 93 aa4.15□□□□□ -1.75
LIMA1-204ENST00000549064 TRAV8-6A0A0B4J262 113 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 IGHV3-16A0A0C4DH30 117 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 LOC100506127A0A0U1RQW1 187 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 SERTM2A0A1B0GWG4 89 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 CRYM-AS1A6NIL9 109 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 PANO1I0J062 215 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 MRPS12O15235 138 aaKnown RBP4.14□□□□□ -1.75
LIMA1-204ENST00000549064 OR5G3P0C626 314 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 IAPPP10997 89 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 RPL13AP40429 203 aaKnown RBP4.14□□□□□ -1.75
LIMA1-204ENST00000549064 AQP4P55087 323 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 IBA57Q5T440 356 aaKnown RBP4.14□□□□□ -1.75
LIMA1-204ENST00000549064 GPR107Q5VW38 600 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 C15orf54Q8N8G6 183 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 OR1S1Q8NH92 325 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 MARCH1Q8TCQ1 289 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 DNAJC30Q96LL9 226 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 DPH3P1Q9H4G8 78 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 NAA60Q9H7X0 242 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 JPT2Q9H910 190 aa4.14□□□□□ -1.75
LIMA1-204ENST00000549064 A0A087WYN8 130 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 C9JCJ5 164 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 MPDU1O75352 247 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 HYPMO75409 117 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 ATP5LO75964 103 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 TNFAIP8O95379 198 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 SLC25A5P05141 298 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 RNASE4P34096 147 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 TGFBR1P36897 503 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 AKR1C1Q04828 323 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 ERCC8Q13216 396 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 RNASE10Q5GAN6 216 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 C6orf226Q5I0X4 101 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 PRR9Q5T870 116 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 RNASEKQ6P5S7 137 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 LCN15Q6UWW0 184 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 PATE2Q6UY27 113 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 ACOT7LQ6ZUV0 252 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 DAZ4Q86SG3 579 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 IQCF2Q8IXL9 164 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 Q8N976 141 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 OR10P1Q8NGE3 313 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 ZFAND1Q8TCF1 268 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 C9orf85Q96MD7 179 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 LINC01600Q96MT4 127 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 ODF3Q96PU9 254 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 SLC50A1Q9BRV3 221 aa4.13□□□□□ -1.75
LIMA1-204ENST00000549064 RTBDNQ9BSG5 229 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 DAZ3Q9NR90 486 aaKnown RBP4.13□□□□□ -1.75
LIMA1-204ENST00000549064 KLLNB2CW77 178 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 CD3DP04234 171 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 IL5P05113 134 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 LINC00869P0C866 280 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 CXCL2P19875 107 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 S100A7P31151 101 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 RAB11AP62491 216 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 SMCO1Q147U7 214 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 SCGB2B2Q4G0G5 96 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 CYP2G1PQ6ZSU1 146 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 OR10G4Q8NGN3 311 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 VCXQ9H320 206 aa4.12□□□□□ -1.75
LIMA1-204ENST00000549064 IGHV1OR15-1A0A075B7D0 117 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 TRAV8-3A0A0A6YYJ7 113 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 M0R3E3 92 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 OR4E1P0C645 316 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 CCR6P51684 374 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 PLP1P60201 277 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 ZNF506Q5JVG8 444 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 FAAP20Q6NZ36 180 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 LYZL2Q7Z4W2 148 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 ATP6V0E2Q8NHE4 81 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 TERB2Q8NHR7 220 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 LINC00477Q96M19 166 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 ARL6Q9H0F7 186 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 PPDPFQ9H3Y8 114 aa4.11□□□□□ -1.75
LIMA1-204ENST00000549064 C14orf166Q9Y224 244 aaKnown RBP4.11□□□□□ -1.75
LIMA1-204ENST00000549064 IGKV2D-24A0A075B6R9 120 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 A0A0J9YXV3 536 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 SMCO3A2RU48 225 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 H3BQ15 152 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 GPX1P07203 203 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 KRTAP10-8P60410 259 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 SH2D6Q7Z4S9 175 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 MTURNQ8N3F0 131 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 ZFAND2AQ8N6M9 145 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 FAM19A4Q96LR4 140 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 CNBD2Q96M20 576 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 OPRPNQ99935 248 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-204ENST00000549064 AGPAT4-IT1Q9H0P7 198 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 ARV1Q9H2C2 271 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 CACFD1Q9UGQ2 172 aa4.1□□□□□ -1.75
LIMA1-204ENST00000549064 TRAV4A0A0B4J268 109 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 A0A0D9SG52 128 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 A0A0U1RQV1 116 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 E9PLD3 99 aa4.09□□□□□ -1.75
LIMA1-204ENST00000549064 H3BP45 60 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms