RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZNF469Q96JG9 3925 aaPredicted RBP0.7□□□□□ -2.3
VPS29-205ENST00000548539 NBDYA0A0U1RRE5 68 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 PNMA8CA0A1B0GUJ8 204 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 HIGD1CA8MV81 97 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 CD3DP04234 171 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 CCDC153Q494R4 210 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 ASB16-AS1Q495Z4 193 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 UNQ5815/PRO19632Q6UWF5 114 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 OR4S1Q8NGB4 309 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 AIF1LQ9BQI0 150 aa0.7□□□□□ -2.3
VPS29-205ENST00000548539 ANK1P16157 1881 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 ASCC3Q8N3C0 2202 aaKnown RBP0.69□□□□□ -2.3
VPS29-205ENST00000548539 TENM3Q9P273 2699 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 TRAV17A0A0B4J275 112 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 FXYD1O00168 92 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 SMIM24O75264 130 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 OR2H2O95918 312 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 TFF1P04155 84 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 SCTP09683 121 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 TMEM91Q6ZNR0 172 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 C5orf56Q8N8D9 126 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 PYDC1Q8WXC3 89 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 DMAC1Q96GE9 116 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 SLC35B3Q9H1N7 401 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 ATG5Q9H1Y0 275 aa0.69□□□□□ -2.3
VPS29-205ENST00000548539 ZGRF1Q86YA3 2104 aa0.68□□□□□ -2.3
VPS29-205ENST00000548539 POLR2JP52435 117 aaKnown RBP0.68□□□□□ -2.3
VPS29-205ENST00000548539 FXYD6P3P58550 94 aa0.68□□□□□ -2.3
VPS29-205ENST00000548539 ARHGAP31Q2M1Z3 1444 aa0.68□□□□□ -2.3
VPS29-205ENST00000548539 SPANXA1Q9NS26 97 aa0.68□□□□□ -2.3
VPS29-205ENST00000548539 DNAJC15Q9Y5T4 150 aa0.68□□□□□ -2.3
VPS29-205ENST00000548539 ARAP1Q96P48 1450 aa0.67□□□□□ -2.3
VPS29-205ENST00000548539 MUC5BQ9HC84 5762 aaPredicted RBP0.67□□□□□ -2.3
VPS29-205ENST00000548539 HLA-DRB4P13762 266 aa0.67□□□□□ -2.3
VPS29-205ENST00000548539 PLGLB1Q02325 96 aa0.67□□□□□ -2.3
VPS29-205ENST00000548539 SPANXCQ9NY87 97 aa0.67□□□□□ -2.3
VPS29-205ENST00000548539 HLA-DRB4X5D2U9 266 aa0.67□□□□□ -2.3
VPS29-205ENST00000548539 BORCS7-ASMTA0A0B4J1R7 106 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 CCKP06307 115 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 DBIP07108 87 aaKnown RBP0.66□□□□□ -2.3
VPS29-205ENST00000548539 SCGB1A1P11684 91 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 AKR1D1P51857 326 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 CLLU1Q5K131 121 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 C10orf99Q6UWK7 81 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 DEFB132Q7Z7B7 95 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 XIRP1Q702N8 1843 aaKnown RBP0.66□□□□□ -2.3
VPS29-205ENST00000548539 KDM5CP41229 1560 aa0.66□□□□□ -2.3
VPS29-205ENST00000548539 MUC4Q99102 2169 aa0.65□□□□□ -2.31
VPS29-205ENST00000548539 SLC25A26Q70HW3 274 aa0.65□□□□□ -2.31
VPS29-205ENST00000548539 FAM103A1Q9BTL3 118 aaKnown RBP0.65□□□□□ -2.31
VPS29-205ENST00000548539 BATF3Q9NR55 127 aa0.65□□□□□ -2.31
VPS29-205ENST00000548539 ZCCHC6Q5VYS8 1495 aaKnown RBP0.65□□□□□ -2.31
VPS29-205ENST00000548539 PTPRGP23470 1445 aa0.64□□□□□ -2.31
VPS29-205ENST00000548539 LRP5O75197 1615 aa0.64□□□□□ -2.31
VPS29-205ENST00000548539 SPINK7P58062 85 aa0.64□□□□□ -2.31
VPS29-205ENST00000548539 SNX29P2Q8IUI4 249 aa0.64□□□□□ -2.31
VPS29-205ENST00000548539 MAGOHBQ96A72 148 aaKnown RBP0.64□□□□□ -2.31
VPS29-205ENST00000548539 TRPM7Q96QT4 1865 aa0.63□□□□□ -2.31
VPS29-205ENST00000548539 CDK12Q9NYV4 1490 aaPredicted RBP0.63□□□□□ -2.31
VPS29-205ENST00000548539 CPDO75976 1380 aa0.63□□□□□ -2.31
VPS29-205ENST00000548539 ARPC5O15511 151 aa0.63□□□□□ -2.31
VPS29-205ENST00000548539 SPINK13Q1W4C9 94 aa0.63□□□□□ -2.31
VPS29-205ENST00000548539 TAS2R8Q9NYW2 309 aa0.63□□□□□ -2.31
VPS29-205ENST00000548539 TRBV10-1A0A0K0K1A3 114 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 RBP4P02753 201 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 CKS1BP61024 79 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 MORN2Q502X0 79 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 LSM2Q9Y333 95 aaKnown RBP0.62□□□□□ -2.31
VPS29-205ENST00000548539 NOP16Q9Y3C1 178 aaKnown RBP0.62□□□□□ -2.31
VPS29-205ENST00000548539 WDR97A6NE52 1622 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 LOC285556D6RIA3 1793 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 KIDINS220Q9ULH0 1771 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 MYH1P12882 1939 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 SYNJ1O43426 1573 aa0.62□□□□□ -2.31
VPS29-205ENST00000548539 BCORL1Q5H9F3 1711 aa0.61□□□□□ -2.31
VPS29-205ENST00000548539 ARHGEF10O15013 1369 aa0.61□□□□□ -2.31
VPS29-205ENST00000548539 RPL37P61927 97 aaKnown RBP0.61□□□□□ -2.31
VPS29-205ENST00000548539 HIST1H1AQ02539 215 aaPredicted RBP0.61□□□□□ -2.31
VPS29-205ENST00000548539 GSKIPQ9P0R6 139 aa0.61□□□□□ -2.31
VPS29-205ENST00000548539 UNC13AQ9UPW8 1703 aa0.61□□□□□ -2.31
VPS29-205ENST00000548539 CXorf51AA0A1B0GTR3 108 aa0.6□□□□□ -2.31
VPS29-205ENST00000548539 ATP6V0E2Q8NHE4 81 aa0.6□□□□□ -2.31
VPS29-205ENST00000548539 PPDPFLQ8WWR9 84 aa0.6□□□□□ -2.31
VPS29-205ENST00000548539 LZICQ8WZA0 190 aa0.6□□□□□ -2.31
VPS29-205ENST00000548539 MDN1Q9NU22 5596 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 LOC105371267A0A1B0GV96 52 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 PRH1P02810 166 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 KLKP1Q107X0 134 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 DYNLRB2Q8TF09 96 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 SMIM3Q9BZL3 60 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 TMEM14BQ9NUH8 114 aa0.59□□□□□ -2.31
VPS29-205ENST00000548539 HELZP42694 1942 aaKnown RBP0.58□□□□□ -2.32
VPS29-205ENST00000548539 M0R129 80 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 APOC1P02654 83 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 SLC25A6P12236 298 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 NCS1P62166 190 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 TMEM141Q96I45 108 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 PLAC8Q9NZF1 115 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 CCDC171Q6TFL3 1326 aa0.58□□□□□ -2.32
VPS29-205ENST00000548539 SPTBP11277 2137 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms