RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-211	ENST00000546304	FLI1	Q01543	452 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	BTN1A1	Q13410	526 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	RBMY1F	Q15415	496 aa	Known RBP	4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF705A	Q6ZN79	300 aa	Predicted RBP	4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF767P	Q75MW2	155 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM256	Q8N2U0	113 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	OR11H2	Q8NH07	326 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	C2CD4C	Q8TF44	421 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	FMC1	Q96HJ9	113 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	SGK494	Q96LW2	274 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	C20orf144	Q9BQM9	153 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	TXNDC17	Q9BRA2	123 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM208	Q9BTX3	173 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	VAX2	Q9UIW0	290 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	PSG8	Q9UQ74	426 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304		U3KQK5	164 aa		4.58	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRAV12-3	A0A0B4J271	114 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRAV34	A0A0B4J273	112 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304		H7BYZ3	331 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	PDE6D	O43924	150 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	GPX1	P07203	203 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	MIF	P14174	115 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF506	Q5JVG8	444 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	PRNT	Q86SH4	94 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	C1orf158	Q8N1D5	194 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304		Q8NAQ8	132 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	LINC00479	Q96M42	142 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	FAM210A	Q96ND0	272 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	RARRES2	Q99969	163 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	NIPSNAP3B	Q9BS92	247 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	C11orf68	Q9H3H3	251 aa	Known RBP	4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	TREM1	Q9NP99	234 aa		4.57	□□□□□ -1.68
PRKDC-211	ENST00000546304	IGHV4-28	A0A0C4DH34	117 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRBV6-1	A0A0K0K1D8	114 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	RBFOX3	A6NFN3	312 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	GCG	P01275	180 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	LTA	P01374	205 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	RNASE4	P34096	147 aa	Known RBP	4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	RPL35	P42766	123 aa	Known RBP	4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	TAS2R60	P59551	318 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	RAB14	P61106	215 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	IFITM2	Q01629	132 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM183B	Q1AE95	376 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	CENPW	Q5EE01	88 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304		Q6AWC8	147 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	TVP23C	Q96ET8	276 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	PYGO2	Q9BRQ0	406 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	SPX	Q9BT56	116 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	DERL1	Q9BUN8	251 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	C1orf43	Q9BWL3	253 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	KLF12	Q9Y4X4	402 aa		4.56	□□□□□ -1.68
PRKDC-211	ENST00000546304	TENM2	Q9NT68	2774 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRAV21	A0A0B4J279	112 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304		A0A0J9YWU9	116 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	SMIM9	A6NGZ8	99 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM250	H0YL14	139 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	DEFB4A	O15263	64 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRIAP1	O43715	76 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	S100A9	P06702	114 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	RRN3P1	Q2M238	152 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	SMUG1	Q53HV7	270 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	CLLU1	Q5K131	121 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	SAPCD1	Q5SSQ6	148 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	NHLRC2	Q8NBF2	726 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	RNASE8	Q8TDE3	154 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM263	Q8WUH6	116 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	C16orf74	Q96GX8	76 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZC2HC1A	Q96GY0	325 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	LINC01587	Q99440	93 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	EIF5A2	Q9GZV4	153 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	EDA2R	Q9HAV5	297 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	MED9	Q9NWA0	146 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	NAGK	Q9UJ70	344 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZFP30	Q9Y2G7	519 aa		4.55	□□□□□ -1.68
PRKDC-211	ENST00000546304	MUC4	Q99102	2169 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	TRBV20OR9-2	A0A075B6H5	130 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	IGHV1OR15-1	A0A075B7D0	117 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM189	A5PLL7	270 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF705G	A8MUZ8	300 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304		F5H697	171 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	NDUFS6	O75380	124 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF324	O75467	553 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	PFN1	P07737	140 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	HTN1	P15515	57 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	GNG4	P50150	75 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	ZNF80	P51504	273 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	CEBPG	P53567	150 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	MUC21	Q5SSG8	566 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	WDR73	Q6P4I2	378 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304		Q6ZQT7	251 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	COX8C	Q7Z4L0	72 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	TMEM183A	Q8IXX5	376 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	EIF4E3	Q8N5X7	224 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	LINC00467	Q9BRT7	94 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	PARL	Q9H300	379 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	TNFRSF18	Q9Y5U5	241 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	DNAH1	Q9P2D7	4330 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	ALMS1	Q8TCU4	4167 aa		4.54	□□□□□ -1.68
PRKDC-211	ENST00000546304	SACS	Q9NZJ4	4579 aa		4.53	□□□□□ -1.68
PRKDC-211	ENST00000546304	PLAC8L1	A1L4L8	177 aa		4.53	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms