RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-225	ENST00000545920	USMG5	Q96IX5	58 aa		4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	ZNF479	Q96JC4	524 aa		4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	SIGMAR1	Q99720	223 aa		4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	MRPL35	Q9NZE8	188 aa	Known RBP	4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	TP73-AS1	Q9UF72	201 aa		4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	MALRD1	Q5VYJ5	2156 aa		4.94	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRBV7-3	A0A075B6L6	115 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRBV20-1	A0A075B6N2	111 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	IGHV4OR15-8	A0A075B7B6	117 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920		A0A087WW49	117 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRAV8-2	A0A0B4J237	113 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	TMEM238	C9JI98	176 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	LYNX1	G3V0Z9	82 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	LYNX1	P0DP58	116 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	ASIP	P42127	132 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	ERCC8	Q13216	396 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	C12orf74	Q32Q52	190 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	DGAT2L7P	Q6IED9	249 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	NEXN-AS1	Q8NBZ9	246 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	GLMP	Q8WWB7	406 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	TMEM141	Q96I45	108 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	C18orf15	Q96N68	181 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	SCGB3A1	Q96QR1	104 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	HIST1H4G	Q99525	98 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	NHP2	Q9NX24	153 aa	Known RBP	4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	MSRB1	Q9NZV6	116 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	SH3BGRL2	Q9UJC5	107 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	MOB4	Q9Y3A3	225 aa		4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	URB1	O60287	2271 aa	Known RBP	4.93	□□□□□ -1.62
SNHG1-225	ENST00000545920	LAMA1	P25391	3075 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	IGKV2D-26	A0A0A0MRZ7	120 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRAV40	A0A0B4J280	105 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	PRAC2	D3DTV9	90 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920		H3BMG7	143 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	ATP6V0E1	O15342	81 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	SAP30	O75446	220 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	EFNA4	P52798	201 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	TCTA	P57738	103 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	RPL24	P83731	157 aa	Known RBP	4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	KLRB1	Q12918	225 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	KLRD1	Q13241	179 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	GTSCR1	Q86UQ5	136 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	LINC01560	Q8TB33	94 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	RAB37	Q96AX2	223 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	FAM19A4	Q96LR4	140 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	ODF3	Q96PU9	254 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	TIMM17A	Q99595	171 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	CYSLTR1	Q9Y271	337 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	UFC1	Q9Y3C8	167 aa		4.92	□□□□□ -1.62
SNHG1-225	ENST00000545920	VCAN	P13611	3396 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	ARFGEF3	Q5TH69	2177 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRAV41	A0A0B4J266	112 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRBV6-5	A0A0K0K1A5	114 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920		A0A1B0GV72	72 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920		K7EMT4	169 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	CCL21	O00585	134 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	NPFF	O15130	113 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	IGF1	P05019	195 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	S100A4	P26447	101 aa	Known RBP	4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	DLX1	P56177	255 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	TIRAP	P58753	221 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	FOXE3	Q13461	319 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	CLEC19A	Q6UXS0	136 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	C5orf56	Q8N8D9	126 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	DLX4	Q92988	240 aa	Predicted RBP	4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	C11orf21	Q9P2W6	132 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	PHLDA3	Q9Y5J5	127 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	OTOGL	Q3ZCN5	2332 aa		4.91	□□□□□ -1.62
SNHG1-225	ENST00000545920	TRIO	O75962	3097 aa		4.9	□□□□□ -1.62
SNHG1-225	ENST00000545920	NCOR1	O75376	2440 aa		4.9	□□□□□ -1.62
SNHG1-225	ENST00000545920	TEX48	A0A1B0GUV7	120 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	TMEM89	A2RUT3	159 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	SOCS3	O14543	225 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	VCY	O14598	125 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	TRGV3	P03979	118 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	ELANE	P08246	267 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	HLA-DMB	P28068	263 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	ID1	P41134	155 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	UBE2D1	P51668	147 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	CRYBA4	P53673	196 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	RIPPLY3	P57055	190 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	SCGB2A2	Q13296	93 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	RHOH	Q15669	191 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	ECSCR	Q19T08	205 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	TCTEX1D4	Q5JR98	221 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	C2orf66	Q6UXQ4	117 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	ZFAND2A	Q8N6M9	145 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	RASL10A	Q92737	203 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920		S4R3C0	116 aa		4.9	□□□□□ -1.63
SNHG1-225	ENST00000545920	CUL9	Q8IWT3	2517 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	GAGE12H	A6NDE8	117 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	C11orf86	A6NJI1	115 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920		H3BVH4	76 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	TRIAP1	O43715	76 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	IGHV1-69	P01742	117 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	IGHV3-23	P01764	117 aa		4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	LGALS1	P09382	135 aa	Known RBP	4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	ZFP36	P26651	326 aa	Known RBP	4.89	□□□□□ -1.63
SNHG1-225	ENST00000545920	SAA4	P35542	130 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms