RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744		F6UB75	175 aa		13.46	□□□□□ -0.26
PTPN6-222	ENST00000543744	COX8A	P10176	69 aa		13.46	□□□□□ -0.26
PTPN6-222	ENST00000543744	DPF1	Q92782	380 aa		13.46	□□□□□ -0.26
PTPN6-222	ENST00000543744	FAM19A4	Q96LR4	140 aa		13.46	□□□□□ -0.26
PTPN6-222	ENST00000543744	MPV17L2	Q567V2	206 aa		13.45	□□□□□ -0.26
PTPN6-222	ENST00000543744	WFDC3	Q8IUB2	231 aa		13.45	□□□□□ -0.26
PTPN6-222	ENST00000543744	SELENOK	Q9Y6D0	94 aa		13.45	□□□□□ -0.26
PTPN6-222	ENST00000543744	RNASE4	P34096	147 aa	Known RBP	13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	MAPK1IP1L	Q8NDC0	245 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	C18orf15	Q96N68	181 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	TRAV26-2	A0A0B4J265	109 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	TRBV7-9	A0A0J9YWB2	115 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	NUDT3	O95989	172 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	SRD5A1	P18405	259 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	S100A4	P26447	101 aa	Known RBP	13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	NRAC	Q8N912	160 aa		13.44	□□□□□ -0.26
PTPN6-222	ENST00000543744	CSPG4	Q6UVK1	2322 aa		13.43	□□□□□ -0.26
PTPN6-222	ENST00000543744	NPS	P0C0P6	89 aa		13.43	□□□□□ -0.26
PTPN6-222	ENST00000543744	ASIP	P42127	132 aa		13.43	□□□□□ -0.26
PTPN6-222	ENST00000543744	OR1N2	Q8NGR9	330 aa		13.43	□□□□□ -0.26
PTPN6-222	ENST00000543744	IGLV2-18	A0A075B6J9	118 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	TMEM89	A2RUT3	159 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	PRSS47	A8MTI9	375 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	EDN2	P20800	178 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	ID1	P41134	155 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	ANXA2R	Q3ZCQ2	193 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	ANKRD39	Q53RE8	183 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	SAMD13	Q5VXD3	122 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	C12orf54	Q6X4T0	127 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	APRG1	Q8IVJ8	170 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	DEFB125	Q8N687	156 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	ZNF462	Q96JM2	2506 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	USP24	Q9UPU5	2620 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	ZFYVE26	Q68DK2	2539 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744		A1L4Q6	167 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744		M0R381	172 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	TMEM158	Q8WZ71	300 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	MRAP2	Q96G30	205 aa		13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	BBC3	Q96PG8	261 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN6-222	ENST00000543744	C10orf99	Q6UWK7	81 aa		13.41	□□□□□ -0.26
PTPN6-222	ENST00000543744	ORAOV1	Q8WV07	137 aa		13.41	□□□□□ -0.26
PTPN6-222	ENST00000543744	PHLDA3	Q9Y5J5	127 aa		13.41	□□□□□ -0.26
PTPN6-222	ENST00000543744	ANKRD17	O75179	2603 aa	Known RBP	13.41	□□□□□ -0.26
PTPN6-222	ENST00000543744	RNF223	E7ERA6	249 aa		13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	BVES-AS1	Q5T3Y7	98 aa		13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	USP9Y	O00507	2555 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	KIR3DS1	Q14943	382 aa		13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	DKK2	Q9UBU2	259 aa		13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	COX11	Q9Y6N1	276 aa		13.4	□□□□□ -0.26
PTPN6-222	ENST00000543744	CSMD2	Q7Z408	3487 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	FAM208B	Q5VWN6	2430 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	MED14OS	P0DP75	135 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	LAGE3	Q14657	143 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	DCANP1	Q8TF63	244 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	VPREB3	Q9UKI3	123 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	SPRY2	O43597	315 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	PRSS1	P07477	247 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	ZNF124	Q15973	351 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744		Q6ZVH6	145 aa		13.39	□□□□□ -0.27
PTPN6-222	ENST00000543744	LRRK2	Q5S007	2527 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	GNRH2	O43555	120 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	CD5L	O43866	347 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	C2orf91	Q6ZV80	131 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	DPH3P1	Q9H4G8	78 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	POLQ	O75417	2590 aa		13.38	□□□□□ -0.27
PTPN6-222	ENST00000543744	SMIM17	P0DL12	118 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	FGF6	P10767	208 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	ZNF843	Q8N446	348 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	KLLN	B2CW77	178 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	IGHV4-31	P0DP07	118 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	ODF1	Q14990	250 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744		Q6YL49	198 aa		13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	C14orf178	Q8N769	122 aa	Predicted RBP	13.37	□□□□□ -0.27
PTPN6-222	ENST00000543744	ATP5L	O75964	103 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	FSHB	P01225	129 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	TCTA	P57738	103 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	BOD1L2	Q8IYS8	172 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	FBN2	P35556	2912 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	CENPE	Q02224	2701 aa		13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	UBR5	O95071	2799 aa	Predicted RBP	13.36	□□□□□ -0.27
PTPN6-222	ENST00000543744	RNASE3	P12724	160 aa	Known RBP	13.35	□□□□□ -0.27
PTPN6-222	ENST00000543744	MYOZ3	Q8TDC0	251 aa		13.35	□□□□□ -0.27
PTPN6-222	ENST00000543744	SMIM2	Q9BVW6	85 aa		13.35	□□□□□ -0.27
PTPN6-222	ENST00000543744	FOXC2	Q99958	501 aa		13.35	□□□□□ -0.27
PTPN6-222	ENST00000543744	ZMAT4	Q9H898	229 aa		13.35	□□□□□ -0.27
PTPN6-222	ENST00000543744	ELANE	P08246	267 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	LGALS1	P09382	135 aa	Known RBP	13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	KRTAP10-9	P60411	292 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	PSMG4	Q5JS54	123 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	FAM159A	Q6UWV7	190 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	ZNF688	P0C7X2	276 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	NMU	P48645	174 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	RASL10A	Q92737	203 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	AP1S3	Q96PC3	154 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	C20orf78	Q9BR46	151 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	ZNF702P	Q9H963	129 aa		13.34	□□□□□ -0.27
PTPN6-222	ENST00000543744	MGP	P08493	103 aa		13.33	□□□□□ -0.28
PTPN6-222	ENST00000543744	SYNJ2BP	P57105	145 aa		13.33	□□□□□ -0.28
PTPN6-222	ENST00000543744	SUMO2	P61956	95 aa	Known RBP	13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms