RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 EIF5AP63241 154 aaKnown RBP3.75□□□□□ -1.81
CLIP1-217ENST00000543205 PSMG4Q5JS54 123 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 MORN5Q5VZ52 161 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 MIR17HGQ75NE6 70 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 FAM24BQ8N5W8 94 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 RCHY1Q96PM5 261 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 ZNF471Q9BX82 626 aaPredicted RBP3.75□□□□□ -1.81
CLIP1-217ENST00000543205 SLC25A2Q9BXI2 301 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 SH3BGRL3Q9H299 93 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 CYTL1Q9NRR1 136 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 TMEM14CQ9P0S9 112 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 COX11Q9Y6N1 276 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 SORL1Q92673 2214 aa3.75□□□□□ -1.81
CLIP1-217ENST00000543205 LOC100131303A0A0U1RQF7 123 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 F6UB75 175 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 ISLRO14498 428 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 OR7C2O60412 319 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 SNRPCP09234 159 aaKnown RBP3.74□□□□□ -1.81
CLIP1-217ENST00000543205 TCL1AP56279 114 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 RAB2AP61019 212 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 CD300CQ08708 224 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 LGALSLQ3ZCW2 172 aaPredicted RBP3.74□□□□□ -1.81
CLIP1-217ENST00000543205 KHDC3LQ587J8 217 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 AKR1C8PQ5T2L2 129 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 SPATA31B1PQ5VZV4 182 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 LCN15Q6UWW0 184 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 PAXXQ9BUH6 204 aa3.74□□□□□ -1.81
CLIP1-217ENST00000543205 KMT2CQ8NEZ4 4911 aaKnown RBP3.74□□□□□ -1.81
CLIP1-217ENST00000543205 LOC102724200A0A096LPH7 203 aaPredicted RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 SMIM9A6NGZ8 99 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 KNCNA6PVL3 124 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 ZNF705EA8MWA4 302 aaPredicted RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 SOCS3O14543 225 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 OR10J4P0C629 311 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 IGLC2P0DOY2 106 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 PYYP10082 97 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 TPT1P13693 172 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 BLNKQ8WV28 456 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 SLC50A1Q9BRV3 221 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RPRMQ9NS64 109 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 TRBV19A0A075B6N1 114 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 TRAV8-2A0A0B4J237 113 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RBMY1BA6NDE4 496 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RBMY1EA6NEQ0 496 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 LYRM9A8MSI8 78 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 H3BQ15 152 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 TSHBP01222 138 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 NBEAP1P0C6P0 100 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RBMY1DP0C7P1 496 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 APOC4P55056 127 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RPL19P84098 196 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 PSG9Q00887 426 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 EIF5AL1Q6IS14 154 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 EBLN2Q6P2I7 272 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 BAP18Q8IXM2 172 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RPP25LQ8N5L8 163 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 RNF182Q8N6D2 247 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 PCNPQ8WW12 178 aaKnown RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 FAM167A-AS1Q96KT0 104 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 B9D2Q9BPU9 175 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 MAP1LC3AQ9H492 121 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 ZNF331Q9NQX6 463 aaPredicted RBP3.73□□□□□ -1.81
CLIP1-217ENST00000543205 ZNF586Q9NXT0 402 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 GOLT1BQ9Y3E0 138 aa3.73□□□□□ -1.81
CLIP1-217ENST00000543205 SLC17A3O00476 420 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 HMGB3O15347 200 aaKnown RBP3.72□□□□□ -1.81
CLIP1-217ENST00000543205 ZNF253O75346 499 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 SEC11BP0C7V7 166 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 UBE2L3P68036 154 aaKnown RBP3.72□□□□□ -1.81
CLIP1-217ENST00000543205 PDE6HQ13956 83 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 LINC00322Q6ZN03 302 aaPredicted RBP3.72□□□□□ -1.81
CLIP1-217ENST00000543205 FOXI2Q6ZQN5 318 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 SBSPONQ8IVN8 264 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 C9orf62Q8N4C0 152 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 STOML3Q8TAV4 291 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 FXYD5Q96DB9 178 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 TENM3Q9P273 2699 aa3.72□□□□□ -1.81
CLIP1-217ENST00000543205 CTXND1A0A1B0GTU2 59 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 UMAD1C9J7I0 102 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 CXorf1O96002 111 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 ARL14EPLP0DKL9 152 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 HLA-DRB4P13762 266 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 HLA-DMBP28068 263 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 NUTF2P61970 127 aaKnown RBP3.71□□□□□ -1.81
CLIP1-217ENST00000543205 OR4B1Q8NGF8 309 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 TMED6Q8WW62 240 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 RPUSD4Q96CM3 377 aaKnown RBP3.71□□□□□ -1.81
CLIP1-217ENST00000543205 KIR2DL4Q99706 377 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 HLA-DRB4X5D2U9 266 aa3.71□□□□□ -1.81
CLIP1-217ENST00000543205 IGLV5-45A0A087WSX0 123 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 A0A0J9YX75 114 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 A0A1B0GV72 72 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 ZNF705FA8MVS1 300 aaPredicted RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 H3BMM0 161 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 DUSP14O95147 198 aaKnown RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 IGKV3-20P01619 116 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 GCHFRP30047 84 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 CSN1S1P47710 185 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 DEFB1P60022 68 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms