RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RHPN1-AS1Q9BWJ2 59 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 VPREB3Q9UKI3 123 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 MED13LQ71F56 2210 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 CR1P17927 2039 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 A0A096LNJ9 63 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 ZNF207O43670 478 aaKnown RBP7.48□□□□□ -1.21
SS18-205ENST00000542420 TRBV12-3P01733 135 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 SCGB2A2Q13296 93 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 KIR3DS1Q14943 382 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 DEFB112Q30KQ8 113 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 Q6YL49 198 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 ZNF843Q8N446 348 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 Q8N8P6 123 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 OR8A1Q8NGG7 326 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 C20orf173Q96LM9 149 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 KLK15Q9H2R5 256 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 LINC00527Q9UJ94 153 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 DCHS2Q6V1P9 2916 aa7.48□□□□□ -1.21
SS18-205ENST00000542420 M0R381 172 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 PPP1R17O96001 155 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 NPYP01303 97 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 CSN3P07498 182 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 SCRT2Q9NQ03 307 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 C11orf21Q9P2W6 132 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 LRBAP50851 2863 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 GAGE10A6NGK3 116 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 SMIM17P0DL12 118 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 FCER1GP30273 86 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 ITPR1Q14643 2758 aa7.47□□□□□ -1.21
SS18-205ENST00000542420 AKAP6Q13023 2319 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 TRAV26-1A0A087WT03 109 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 C7orf71A4D174 169 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 NXPH4O95158 308 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 TNFRSF6BO95407 300 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 LGALS1P09382 135 aaKnown RBP7.46□□□□□ -1.21
SS18-205ENST00000542420 IGHV4-31P0DP07 118 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 CRYBA4P53673 196 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 DEFB113Q30KQ7 82 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 SLC25A34Q6PIV7 304 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 LINC00173Q6ZV60 143 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 C2orf91Q6ZV80 131 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 Q8N2B8 174 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 TMEM86BQ8N661 226 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 POM121L12Q8N7R1 296 aa7.46□□□□□ -1.21
SS18-205ENST00000542420 IGHV3OR16-13A0A075B7E8 117 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 IGHV3-49A0A0A0MS15 119 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 IGHV3-74A0A0B4J1X5 117 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 LINC01549A6NIU2 74 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 KLLNB2CW77 178 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 K7EP34 96 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 ASIPP42127 132 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 GTSF1LQ9H1H1 148 aa7.46□□□□□ -1.22
SS18-205ENST00000542420 IGLV2-18A0A075B6J9 118 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 TRAV2A0A0B4J234 112 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 hDV102S1A0JD36 115 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 TGFAP01135 160 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 IGHV3-11P01762 117 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 IGHV4-59P01825 116 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 LEPP41159 167 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 OR2K2Q8NGT1 345 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 IFI27L1Q96BM0 104 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 UBE2E2Q96LR5 201 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 C20orf78Q9BR46 151 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 SELENOKQ9Y6D0 94 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 RPL32P62910 135 aaKnown RBP7.45□□□□□ -1.22
SS18-205ENST00000542420 SMAGPQ0VAQ4 97 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 SPANXN1Q5VSR9 72 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 Q6ZS46 218 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 DCANP1Q8TF63 244 aa7.45□□□□□ -1.22
SS18-205ENST00000542420 ATP5LO75964 103 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 COX8AP10176 69 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 SRSF1Q07955 248 aaKnown RBP eCLIP7.44□□□□□ -1.22
SS18-205ENST00000542420 NRACQ8N912 160 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 DPH3P1Q9H4G8 78 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 MSRB1Q9NZV6 116 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 C9orf118A6NHY6 69 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 SIVA1O15304 175 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 HLA-DRB4P13762 266 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 TM4SF20Q53R12 229 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 PRR9Q5T870 116 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 GTF2H5Q6ZYL4 71 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 ZNF702PQ9H963 129 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 HLA-DRB4X5D2U9 266 aa7.44□□□□□ -1.22
SS18-205ENST00000542420 LOC389332A0A1B0GUA5 103 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 BBC3Q96PG8 261 aaPredicted RBP7.43□□□□□ -1.22
SS18-205ENST00000542420 SIGMAR1Q99720 223 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 DUSP14O95147 198 aaKnown RBP7.43□□□□□ -1.22
SS18-205ENST00000542420 SNRPD3P62318 126 aaKnown RBP7.43□□□□□ -1.22
SS18-205ENST00000542420 SEC11AP67812 179 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 HSD52Q0P140 79 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 TCTEX1D4Q5JR98 221 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 ZMAT4Q9H898 229 aa7.43□□□□□ -1.22
SS18-205ENST00000542420 TEX48A0A1B0GUV7 120 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 H3BRM9 83 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 K7EQG2 157 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 NCR2O95944 276 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 LAGE3Q14657 143 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 ORMDL2Q53FV1 153 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 PRR31Q5SQ13 230 aa7.42□□□□□ -1.22
SS18-205ENST00000542420 AP1S3Q96PC3 154 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms