RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ID1P41134 155 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 LINC00614P0C842 121 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 LINC00173Q6ZV60 143 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 REC114Q7Z4M0 266 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 GATD1Q8NB37 220 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 DPF1Q92782 380 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 PPP1R14DQ9NXH3 145 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 EVI2AP22794 236 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 FXYD7P58549 80 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 SRSF2Q01130 221 aaKnown RBP10.88□□□□□ -0.67
CLIP1-216ENST00000541410 DLX4Q92988 240 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-216ENST00000541410 IGHV1-24A0A0C4DH33 117 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 LINC01619G3V211 115 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 LGALS9O00182 355 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 GNRH2O43555 120 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 ANXA2RQ3ZCQ2 193 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 EBLN2Q6P2I7 272 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 ATOH7Q8N100 152 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 TMEM86BQ8N661 226 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 OR1N2Q8NGR9 330 aa10.88□□□□□ -0.67
CLIP1-216ENST00000541410 TRAV12-2A0A075B6T6 113 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 CKS2P33552 79 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 IFI27P40305 119 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-216ENST00000541410 Q8N976 141 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 PRELID3AQ96N28 172 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 MUC4Q99102 2169 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 K7EQG2 157 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 GATA1P15976 413 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-216ENST00000541410 PKIAP61925 76 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 C4orf3Q8WVX3 66 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 FAM19A4Q96LR4 140 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 LENEPQ9Y5L5 61 aa10.87□□□□□ -0.67
CLIP1-216ENST00000541410 TRAV21A0A0B4J279 112 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 TSTD3H0UI37 97 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 NPYP01303 97 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 CD28P10747 220 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 ZNF124Q15973 351 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 DNLZQ5SXM8 178 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 SPANXN1Q5VSR9 72 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 TEX29Q8N6K0 151 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 PRSS3P2Q8NHM4 247 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 RNF185Q96GF1 192 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 PAM16Q9Y3D7 125 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 OTOGQ6ZRI0 2925 aa10.86□□□□□ -0.67
CLIP1-216ENST00000541410 TRAV12-3A0A0B4J271 114 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 RAB4AP20338 218 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 SNRPD3P62318 126 aaKnown RBP10.85□□□□□ -0.67
CLIP1-216ENST00000541410 ORMDL3Q8N138 153 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 CNFNQ9BYD5 112 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 SETXQ7Z333 2677 aaKnown RBP10.85□□□□□ -0.67
CLIP1-216ENST00000541410 NIPBLQ6KC79 2804 aaeCLIP10.85□□□□□ -0.67
CLIP1-216ENST00000541410 TRAV26-2A0A0B4J265 109 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 H0Y8G0 127 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 M0R381 172 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 S100A4P26447 101 aaKnown RBP10.85□□□□□ -0.67
CLIP1-216ENST00000541410 MCRIP2Q9BUT9 160 aaKnown RBP10.85□□□□□ -0.67
CLIP1-216ENST00000541410 TMEM191AQ9H0A3 160 aa10.85□□□□□ -0.67
CLIP1-216ENST00000541410 SPATA12Q7Z6I5 190 aa10.84□□□□□ -0.67
CLIP1-216ENST00000541410 OR9G4Q8NGQ1 327 aa10.84□□□□□ -0.67
CLIP1-216ENST00000541410 SIGLEC8Q9NYZ4 499 aa10.84□□□□□ -0.67
CLIP1-216ENST00000541410 CHCHD1Q96BP2 118 aaKnown RBP10.84□□□□□ -0.67
CLIP1-216ENST00000541410 DDTP30046 118 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 SPINK13Q1W4C9 94 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 FA2HQ7L5A8 372 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 TMEM61Q8N0U2 210 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 CITED2Q99967 270 aaPredicted RBP10.83□□□□□ -0.68
CLIP1-216ENST00000541410 A0A0J9YX75 114 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 KNCNA6PVL3 124 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 MAJINQ3KP22 176 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 LINC01006Q8NI28 216 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 RAX2Q96IS3 184 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 AP5S1Q9NUS5 200 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 U3KQK5 164 aa10.83□□□□□ -0.68
CLIP1-216ENST00000541410 LEPROTL1O95214 131 aa10.82□□□□□ -0.68
CLIP1-216ENST00000541410 KLLNB2CW77 178 aa10.82□□□□□ -0.68
CLIP1-216ENST00000541410 OR5AL1P0C617 328 aa10.82□□□□□ -0.68
CLIP1-216ENST00000541410 TEX43Q6ZNM6 134 aa10.82□□□□□ -0.68
CLIP1-216ENST00000541410 LY6G6DO95868 133 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 ASIPP42127 132 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 DEFB131AP59861 70 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 NOTCH3Q9UM47 2321 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 SNAI2O43623 268 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 BTF3P20290 206 aaKnown RBP10.81□□□□□ -0.68
CLIP1-216ENST00000541410 DYNLRB2Q8TF09 96 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 VAMP8Q9BV40 100 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 PHLDA3Q9Y5J5 127 aa10.81□□□□□ -0.68
CLIP1-216ENST00000541410 RNASE3P12724 160 aaKnown RBP10.8□□□□□ -0.68
CLIP1-216ENST00000541410 APRG1Q8IVJ8 170 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 PEMTQ9UBM1 199 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 RNASE1P07998 156 aaKnown RBP10.8□□□□□ -0.68
CLIP1-216ENST00000541410 CD7P09564 240 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 SAMD13Q5VXD3 122 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 DMRTA1Q5VZB9 504 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 FAM159AQ6UWV7 190 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 C14orf178Q8N769 122 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-216ENST00000541410 PMCHL2Q9BQD1 86 aa10.8□□□□□ -0.68
CLIP1-216ENST00000541410 FN1P02751 2386 aaKnown RBP10.79□□□□□ -0.68
CLIP1-216ENST00000541410 TNFRSF6BO95407 300 aa10.79□□□□□ -0.68
CLIP1-216ENST00000541410 CD300EQ496F6 205 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-216ENST00000541410 A0A096LNJ9 63 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms