RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 NUDT10Q8NFP7 164 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 SMIM12Q96EX1 92 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 NUDT11Q96G61 164 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 LINC01587Q99440 93 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 NIPSNAP3BQ9BS92 247 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 C1QTNF4Q9BXJ3 329 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 TP53TG3Q9ULZ0 132 aa6.77□□□□□ -1.33
DDX55-208ENST00000541259 IGHV1OR15-1A0A075B7D0 117 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 IGKV3D-20A0A0C4DH25 116 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 ZNF705GA8MUZ8 300 aaPredicted RBP6.76□□□□□ -1.33
DDX55-208ENST00000541259 M0R036 132 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 UBE2CO00762 179 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 HTN1P15515 57 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 AZU1P20160 251 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 RPL19P84098 196 aaKnown RBP6.76□□□□□ -1.33
DDX55-208ENST00000541259 ANXA2RQ3ZCQ2 193 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 ISOC2Q96AB3 205 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 RNF183Q96D59 192 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 OVOL2Q9BRP0 275 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 TMEM208Q9BTX3 173 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 NAGKQ9UJ70 344 aa6.76□□□□□ -1.33
DDX55-208ENST00000541259 CARHSP1Q9Y2V2 147 aaKnown RBP6.76□□□□□ -1.33
DDX55-208ENST00000541259 TMSB15BA0A087X1C1 80 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 KRBOX1C9JBD0 128 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 GNRH2O43555 120 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 SPRY2O43597 315 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 APOC3P02656 99 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 ORM1P02763 201 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 IBA57Q5T440 356 aaKnown RBP6.75□□□□□ -1.33
DDX55-208ENST00000541259 ZNF705AQ6ZN79 300 aaPredicted RBP6.75□□□□□ -1.33
DDX55-208ENST00000541259 Q6ZWC4 215 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 DAZAP1Q96EP5 407 aaKnown RBP6.75□□□□□ -1.33
DDX55-208ENST00000541259 RCHY1Q96PM5 261 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 C20orf144Q9BQM9 153 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 GOLT1BQ9Y3E0 138 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 X6R8D5 127 aa6.75□□□□□ -1.33
DDX55-208ENST00000541259 GRIFINA4D1Z8 144 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 TMEM189A5PLL7 270 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 B4DEV8 164 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 H7BYZ3 331 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 GATCO43716 136 aaKnown RBP6.74□□□□□ -1.33
DDX55-208ENST00000541259 P01737 135 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 TYMSP04818 313 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 GZMBP10144 247 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 ERVFC1-1P60608 527 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 FAM159AQ6UWV7 190 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 FAM231DQ6ZW35 169 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 TMEM256Q8N2U0 113 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 OR2D3Q8NGH3 330 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 OR11H2Q8NH07 326 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 SFRP2Q96HF1 295 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 TM2D3Q9BRN9 247 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 BIN3Q9NQY0 253 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 COL7A1Q02388 2944 aa6.74□□□□□ -1.33
DDX55-208ENST00000541259 CBY3A6NI87 242 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 PNRC1Q12796 327 aaPredicted RBP6.73□□□□□ -1.33
DDX55-208ENST00000541259 TDRG1Q3Y452 100 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 RNF212Q495C1 297 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 CLRN3Q8NCR9 226 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 OR10G8Q8NGN5 311 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 B9D2Q9BPU9 175 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 PYGO2Q9BRQ0 406 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 LINC00467Q9BRT7 94 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 RPP21Q9H633 154 aaKnown RBP6.73□□□□□ -1.33
DDX55-208ENST00000541259 OSTCQ9NRP0 149 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 MDFICQ9P1T7 246 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 V9GYV3 84 aa6.73□□□□□ -1.33
DDX55-208ENST00000541259 NACAE9PAV3 2078 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 DEFB4AO15263 64 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 ATP6V1G1O75348 118 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 ATRAIDQ6UW56 229 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 KCNS1Q96KK3 526 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 NEU1Q99519 415 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 GSN-AS1Q9NRJ2 163 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 TP53TG1Q9Y2A0 90 aa6.72□□□□□ -1.33
DDX55-208ENST00000541259 IGHV3-16A0A0C4DH30 117 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 IGHV4-28A0A0C4DH34 117 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 PLAC8L1A1L4L8 177 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 C7orf77A4D0Y5 90 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 RNASE3P12724 160 aaKnown RBP6.71□□□□□ -1.34
DDX55-208ENST00000541259 RRN3P1Q2M238 152 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 C15orf54Q8N8G6 183 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 Q8NAQ8 132 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 C11orf72Q8NBR9 251 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 RNASE8Q8TDE3 154 aaKnown RBP6.71□□□□□ -1.34
DDX55-208ENST00000541259 SPATA25Q9BR10 227 aa6.71□□□□□ -1.34
DDX55-208ENST00000541259 TIMM8BQ9Y5J9 83 aaPredicted RBP6.71□□□□□ -1.34
DDX55-208ENST00000541259 MUC21A0A0G2JKD1 596 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 MUC21A0A140T8X8 626 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 SMIM9A6NGZ8 99 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 H3BVH4 76 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 MT-ND4LP03901 98 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 EMP1P54849 157 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 TCL1AP56279 114 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 DNLZQ5SXM8 178 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 SVBPQ8N300 66 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 TMEM263Q8WUH6 116 aaKnown RBP6.7□□□□□ -1.34
DDX55-208ENST00000541259 GTSF1Q8WW33 167 aa6.7□□□□□ -1.34
DDX55-208ENST00000541259 TRGV11A0A075B6L2 103 aa6.69□□□□□ -1.34
DDX55-208ENST00000541259 A8MWL6 223 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms