RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CT83Q5H943 113 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 FAM162BQ5T6X4 162 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 SBSPONQ8IVN8 264 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 RNASE8Q8TDE3 154 aaKnown RBP7.62□□□□□ -1.19
VPS33A-204ENST00000540669 SPATA25Q9BR10 227 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 PYGO2Q9BRQ0 406 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 NIPSNAP3BQ9BS92 247 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 OSTCQ9NRP0 149 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 TGP01266 2768 aa7.62□□□□□ -1.19
VPS33A-204ENST00000540669 TRAV12-3A0A0B4J271 114 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 KRBOX1C9JBD0 128 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 CEBPGP53567 150 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 OR5I1Q13606 314 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 DEFB135Q30KP9 77 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 Q8NAQ8 132 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 C11orf72Q8NBR9 251 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 OVOL2Q9BRP0 275 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 U3KQK5 164 aa7.61□□□□□ -1.19
VPS33A-204ENST00000540669 IGHV1OR15-1A0A075B7D0 117 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 FABP5P3A8MUU1 101 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 F8W036 122 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 SPRY2O43597 315 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 IGLC6P0CF74 106 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 RNASE4P34096 147 aaKnown RBP7.6□□□□□ -1.19
VPS33A-204ENST00000540669 BIN3Q9NQY0 253 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 V9GYV3 84 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 MUC4Q99102 2169 aa7.6□□□□□ -1.19
VPS33A-204ENST00000540669 TYMSP04818 313 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 MED14OSP0DP75 135 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 IBA57Q5T440 356 aaKnown RBP7.59□□□□□ -1.19
VPS33A-204ENST00000540669 NUDT10Q8NFP7 164 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 NUDT11Q96G61 164 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 C9orf85Q96MD7 179 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 SSBP4Q9BWG4 385 aaPredicted RBP7.59□□□□□ -1.19
VPS33A-204ENST00000540669 CNFNQ9BYD5 112 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 RNASE7Q9H1E1 156 aaKnown RBP7.59□□□□□ -1.19
VPS33A-204ENST00000540669 C11orf68Q9H3H3 251 aaKnown RBP7.59□□□□□ -1.19
VPS33A-204ENST00000540669 SCRT2Q9NQ03 307 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 GOLT1BQ9Y3E0 138 aa7.59□□□□□ -1.19
VPS33A-204ENST00000540669 IGHV3-16A0A0C4DH30 117 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 SMIM9A6NGZ8 99 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 J3KRW8 73 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 SNAI2O43623 268 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 NXPH4O95158 308 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 MGST1P10620 155 aaKnown RBP7.58□□□□□ -1.2
VPS33A-204ENST00000540669 RNASE3P12724 160 aaKnown RBP7.58□□□□□ -1.2
VPS33A-204ENST00000540669 CTRLP40313 264 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 RPL19P84098 196 aaKnown RBP7.58□□□□□ -1.2
VPS33A-204ENST00000540669 ADIRFQ15847 76 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 PRR27Q6MZM9 219 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 LINC00612Q8N6U2 182 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 TMEM263Q8WUH6 116 aaKnown RBP7.58□□□□□ -1.2
VPS33A-204ENST00000540669 SFRP2Q96HF1 295 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 KCNS1Q96KK3 526 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 WWC2-AS2Q96NR7 200 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 RCHY1Q96PM5 261 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 RPP21Q9H633 154 aaKnown RBP7.58□□□□□ -1.2
VPS33A-204ENST00000540669 RETNQ9HD89 108 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 NACAE9PAV3 2078 aa7.58□□□□□ -1.2
VPS33A-204ENST00000540669 CSMD3Q7Z407 3707 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 FAM231BA6NCW3 169 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 B4DEV8 164 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 MIFP14174 115 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 AZU1P20160 251 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 FOXA3P55318 350 aaPredicted RBP7.57□□□□□ -1.2
VPS33A-204ENST00000540669 TCL1AP56279 114 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 ZNF493Q6ZR52 646 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 GTSF1Q8WW33 167 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 PTH2Q96A98 100 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 IL36BQ9NZH7 164 aa7.57□□□□□ -1.2
VPS33A-204ENST00000540669 TRGV11A0A075B6L2 103 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 A0A087WWC5 75 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 P01737 135 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 OR5AL1P0C617 328 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 LORP23490 312 aaPredicted RBP7.56□□□□□ -1.2
VPS33A-204ENST00000540669 RHEBQ15382 184 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 RNF212Q495C1 297 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 MUC21Q5SSG8 566 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 CLRN3Q8NCR9 226 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 C16orf74Q96GX8 76 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 GFRA4Q9GZZ7 299 aa7.56□□□□□ -1.2
VPS33A-204ENST00000540669 STARD9Q9P2P6 4700 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 IGHV4-28A0A0C4DH34 117 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 SMIM27A0A1W2PRY6 76 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 ZNF705GA8MUZ8 300 aaPredicted RBP7.55□□□□□ -1.2
VPS33A-204ENST00000540669 M0R036 132 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 PRM2P04554 102 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 RPS20P60866 119 aaKnown RBP7.55□□□□□ -1.2
VPS33A-204ENST00000540669 DAZ2Q13117 558 aaKnown RBP7.55□□□□□ -1.2
VPS33A-204ENST00000540669 PIK3CD-AS1Q5SR53 167 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 FAM159AQ6UWV7 190 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 SVBPQ8N300 66 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 OR2D3Q8NGH3 330 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 OR11H2Q8NH07 326 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 TSKUQ8WUA8 353 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 C18orf15Q96N68 181 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 LINC01587Q99440 93 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 TMEM242Q9NWH2 141 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 MDFICQ9P1T7 246 aa7.55□□□□□ -1.2
VPS33A-204ENST00000540669 IGHV4-4A0A075B6R2 117 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms