RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 RHPN1-AS1Q9BWJ2 59 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 TRBV6-1A0A0K0K1D8 114 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 TNFRSF6BO95407 300 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 M0QZK8 103 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 HTN1P15515 57 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 ZNF124Q15973 351 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 SLC25A34Q6PIV7 304 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 S100A4P26447 101 aaKnown RBP12.85□□□□□ -0.35
USP28-208ENST00000540438 JPT2Q9H910 190 aa12.85□□□□□ -0.35
USP28-208ENST00000540438 PRSS1P07477 247 aa12.85□□□□□ -0.35
USP28-208ENST00000540438 PCP2Q8IVA1 136 aa12.85□□□□□ -0.35
USP28-208ENST00000540438 C14orf178Q8N769 122 aaPredicted RBP12.85□□□□□ -0.35
USP28-208ENST00000540438 BEX4Q9NWD9 120 aaPredicted RBP12.85□□□□□ -0.35
USP28-208ENST00000540438 TRAV12-2A0A075B6T6 113 aa12.84□□□□□ -0.35
USP28-208ENST00000540438 MGPP08493 103 aa12.84□□□□□ -0.35
USP28-208ENST00000540438 DEFB136Q30KP8 78 aa12.84□□□□□ -0.35
USP28-208ENST00000540438 ZNF493Q6ZR52 646 aa12.84□□□□□ -0.35
USP28-208ENST00000540438 NPFFR1Q9GZQ6 430 aa12.84□□□□□ -0.35
USP28-208ENST00000540438 PRM2P04554 102 aa12.83□□□□□ -0.35
USP28-208ENST00000540438 TMEM158Q8WZ71 300 aa12.83□□□□□ -0.35
USP28-208ENST00000540438 C7orf71A4D174 169 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 K7EP13 123 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 ZNF688P0C7X2 276 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 Q6AWC8 147 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 IFI27L1Q96BM0 104 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 RAB9AP51151 201 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 C11orf44Q8N8P7 122 aa12.83□□□□□ -0.36
USP28-208ENST00000540438 CRXO43186 299 aaPredicted RBP12.82□□□□□ -0.36
USP28-208ENST00000540438 RPL39LQ96EH5 51 aaKnown RBP12.82□□□□□ -0.36
USP28-208ENST00000540438 SLC50A1Q9BRV3 221 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 IGHV7-4-1A0A0J9YVY3 117 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 HBDP02042 147 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 ANXA2RQ3ZCQ2 193 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 LINC01545Q5VT33 79 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 PET117Q6UWS5 81 aa12.82□□□□□ -0.36
USP28-208ENST00000540438 MUC4Q99102 2169 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 SCRT2Q9NQ03 307 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 CCL25O15444 150 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 VAMP3Q15836 100 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 C18orf65Q6ZTR6 163 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 MAP1LC3AQ9H492 121 aa12.81□□□□□ -0.36
USP28-208ENST00000540438 PTTG1IPP53801 180 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 RAB37Q96AX2 223 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 A6NDX4 124 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 FOXC2Q99958 501 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 FN1P02751 2386 aaKnown RBP12.8□□□□□ -0.36
USP28-208ENST00000540438 FASNP49327 2511 aaKnown RBP12.8□□□□□ -0.36
USP28-208ENST00000540438 GTSCR1Q86UQ5 136 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 LINC00477Q96M19 166 aa12.8□□□□□ -0.36
USP28-208ENST00000540438 TRAV12-3A0A0B4J271 114 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 IGHG2P01859 326 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 OR10J6PQ8NGY7 276 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 TMEM160Q9NX00 188 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 A0A087WWL8 130 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 IGKV2D-26A0A0A0MRZ7 120 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 SYNJ2BPP57105 145 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 LINC01559Q495D7 138 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 KHDC1LQ5JSQ8 128 aa12.79□□□□□ -0.36
USP28-208ENST00000540438 ST20Q9HBF5 79 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 HIVEP2P31629 2446 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 EMP1P54849 157 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 ZFAND2AQ8N6M9 145 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 OR2K2Q8NGT1 345 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 PSMG3-AS1Q96PY0 264 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 MRPS16Q9Y3D3 137 aaKnown RBP12.78□□□□□ -0.36
USP28-208ENST00000540438 B4DSR2 109 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 RPS20P60866 119 aaKnown RBP12.78□□□□□ -0.36
USP28-208ENST00000540438 C19orf54Q5BKX5 351 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 ZC2HC1BQ5TFG8 222 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 MEGF9Q9H1U4 602 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 U3KQE9 123 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 U3KQK5 164 aa12.78□□□□□ -0.36
USP28-208ENST00000540438 NBEAL2Q6ZNJ1 2754 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 A0A1B0GW15 77 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 PSMG4Q5JS54 123 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 BVES-AS1Q5T3Y7 98 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 FAM74A4Q5TZK3 123 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 PHLDA3Q9Y5J5 127 aa12.77□□□□□ -0.36
USP28-208ENST00000540438 FAM223BA6NKX1 122 aa12.77□□□□□ -0.37
USP28-208ENST00000540438 FAM223AQ8IWN6 122 aa12.77□□□□□ -0.37
USP28-208ENST00000540438 KLK9Q9UKQ9 250 aa12.76□□□□□ -0.37
USP28-208ENST00000540438 C2orf91Q6ZV80 131 aa12.76□□□□□ -0.37
USP28-208ENST00000540438 SRSF1Q07955 248 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP28-208ENST00000540438 NDUFA4O00483 81 aa12.75□□□□□ -0.37
USP28-208ENST00000540438 C9orf47Q6ZRZ4 202 aa12.75□□□□□ -0.37
USP28-208ENST00000540438 COX11Q9Y6N1 276 aa12.75□□□□□ -0.37
USP28-208ENST00000540438 SMIM17P0DL12 118 aa12.74□□□□□ -0.37
USP28-208ENST00000540438 SMIM15Q7Z3B0 74 aa12.74□□□□□ -0.37
USP28-208ENST00000540438 SETXQ7Z333 2677 aaKnown RBP12.74□□□□□ -0.37
USP28-208ENST00000540438 TRAV8-6A0A0B4J262 113 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 F5H697 171 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 CD5LO43866 347 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 AMMECR1LQ6DCA0 310 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 TMEM190Q8WZ59 177 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 DAZ1Q9NQZ3 744 aaKnown RBP12.73□□□□□ -0.37
USP28-208ENST00000540438 PEF1Q9UBV8 284 aaKnown RBP12.73□□□□□ -0.37
USP28-208ENST00000540438 C9orf139Q6ZV77 190 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 PPP1R14DQ9NXH3 145 aa12.73□□□□□ -0.37
USP28-208ENST00000540438 SPINK13Q1W4C9 94 aa12.72□□□□□ -0.37
USP28-208ENST00000540438 GATD1Q8NB37 220 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms