RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ATP6V0E1O15342 81 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 CSMD1Q96PZ7 3565 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 ATMQ13315 3056 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 RPL11P62913 178 aaKnown RBP8.64□□□□□ -1.03
SYNE1-237ENST00000539504 C14orf178Q8N769 122 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-237ENST00000539504 IGKV3-7A0A075B6H7 116 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 IGHV7-4-1A0A0J9YVY3 117 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 RBAKDNA6NC62 111 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 AKAP13Q12802 2813 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 ZNF815PA8K554 130 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 INSL3P51460 131 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 ZFAND3Q9H8U3 227 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 PHLDA3Q9Y5J5 127 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 APOMO95445 188 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 ARL3P36405 182 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 ATP5G2Q06055 141 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 ORMDL2Q53FV1 153 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 Q8N9W7 124 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 FAM110DQ8TAY7 271 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-237ENST00000539504 NDUFS8O00217 210 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 RPL39LQ96EH5 51 aaKnown RBP8.63□□□□□ -1.03
SYNE1-237ENST00000539504 LINC00527Q9UJ94 153 aa8.63□□□□□ -1.03
SYNE1-237ENST00000539504 A0A1B0GV72 72 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 HLA-DRB4P13762 266 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 SUMO2P61956 95 aaKnown RBP8.62□□□□□ -1.03
SYNE1-237ENST00000539504 ZNF418Q8TF45 676 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-237ENST00000539504 EEF1AKMT3Q96AZ1 226 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 PRADC1Q9BSG0 188 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 HLA-DRB4X5D2U9 266 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 IGF1P05019 195 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 PSMB2P49721 201 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 EMP1P54849 157 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 TRAV8-2A0A0B4J237 113 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 MSRB2Q9Y3D2 182 aa8.62□□□□□ -1.03
SYNE1-237ENST00000539504 LINC01549A6NIU2 74 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 LINC01548A6NM66 108 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 DEFB1P60022 68 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 C2orf66Q6UXQ4 117 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 MRAP2Q96G30 205 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 CEP295Q9C0D2 2601 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 TRBV7-3A0A075B6L6 115 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 TMEM238LA0A1B0GVL6 79 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 A6NJY4 79 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 SLC25A16P16260 332 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 Q8N6K4 173 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 GLMPQ8WWB7 406 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 CCDC140Q96MF4 163 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 LRBAP50851 2863 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 CLPSL1A2RUU4 121 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 CCL21O00585 134 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 LGALS1P09382 135 aaKnown RBP8.61□□□□□ -1.03
SYNE1-237ENST00000539504 MINOS1Q5TGZ0 78 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 MINOS1-NBL1R4GNA1 71 aa8.61□□□□□ -1.03
SYNE1-237ENST00000539504 OOSP1A8MZH6 123 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 TGFAP01135 160 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 PRR9Q5T870 116 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 COL6A6A6NMZ7 2263 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 PRSS29PA6NIE9 313 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 ASIPP42127 132 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 Q5PR19 223 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 C20orf78Q9BR46 151 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 TRAV12-1A0A0B4J245 112 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 SCGB1A1P11684 91 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 ZFP36P26651 326 aaKnown RBP8.6□□□□□ -1.03
SYNE1-237ENST00000539504 KLHL30-AS1Q8NEE0 82 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 OR10J6PQ8NGY7 276 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 ATP6V0BQ99437 205 aa8.6□□□□□ -1.03
SYNE1-237ENST00000539504 RNASE4P34096 147 aaKnown RBP8.59□□□□□ -1.03
SYNE1-237ENST00000539504 WFDC12Q8WWY7 111 aa8.59□□□□□ -1.03
SYNE1-237ENST00000539504 DPH3P1Q9H4G8 78 aa8.59□□□□□ -1.03
SYNE1-237ENST00000539504 C9orf47Q6ZRZ4 202 aa8.59□□□□□ -1.03
SYNE1-237ENST00000539504 RASL10AQ92737 203 aa8.59□□□□□ -1.03
SYNE1-237ENST00000539504 DLX4Q92988 240 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-237ENST00000539504 CKS1BP61024 79 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 TMEM219Q86XT9 240 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 SYT8Q8NBV8 401 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 BAALCQ8WXS3 180 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 TOMM6Q96B49 74 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 PSMG3-AS1Q96PY0 264 aa8.59□□□□□ -1.04
SYNE1-237ENST00000539504 TRAV21A0A0B4J279 112 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 PLEKHB2Q96CS7 222 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 SCGB1C2P0DMR2 95 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 SAA4P35542 130 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 EBI3Q14213 229 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 NEXN-AS1Q8NBZ9 246 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 SPOCK3Q9BQ16 436 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 IGHV3OR16-10A0A075B7F0 116 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 F5H697 171 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 ANXA2RQ3ZCQ2 193 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 MORN3Q6PF18 240 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-237ENST00000539504 SPATA25Q9BR10 227 aa8.58□□□□□ -1.04
SYNE1-237ENST00000539504 SPTAN1Q13813 2472 aaKnown RBP8.57□□□□□ -1.04
SYNE1-237ENST00000539504 PRSS47A8MTI9 375 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 GNRH2O43555 120 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 HERVK_113P61574 105 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 PTH2Q96A98 100 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 MRPL53Q96EL3 112 aaKnown RBP8.57□□□□□ -1.04
SYNE1-237ENST00000539504 C20orf173Q96LM9 149 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 PTPRQQ9UMZ3 2332 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 TRBV7-1A0A0A6YYK4 115 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms