RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 TRAV21A0A0B4J279 112 aa11.11□□□□□ -0.63
RPAIN-206ENST00000539417 TCL1AP56279 114 aa11.11□□□□□ -0.63
RPAIN-206ENST00000539417 DAZ2Q13117 558 aaKnown RBP11.11□□□□□ -0.63
RPAIN-206ENST00000539417 NDFIP1Q9BT67 221 aa11.11□□□□□ -0.63
RPAIN-206ENST00000539417 KMT2AQ03164 3969 aa11.11□□□□□ -0.63
RPAIN-206ENST00000539417 TYMSP04818 313 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 CRIP1P50238 77 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 TDRG1Q3Y452 100 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 SMUG1Q53HV7 270 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 FAM159AQ6UWV7 190 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 LINC00476Q8WZB0 136 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 ZC2HC1AQ96GY0 325 aa11.1□□□□□ -0.63
RPAIN-206ENST00000539417 MRPL16Q9NX20 251 aaKnown RBP11.1□□□□□ -0.63
RPAIN-206ENST00000539417 SPINK4O60575 86 aa11.09□□□□□ -0.63
RPAIN-206ENST00000539417 AKR1C3P42330 323 aa11.09□□□□□ -0.63
RPAIN-206ENST00000539417 SAPCD1Q5SSQ6 148 aa11.09□□□□□ -0.63
RPAIN-206ENST00000539417 IBA57Q5T440 356 aaKnown RBP11.09□□□□□ -0.63
RPAIN-206ENST00000539417 PCNPQ8WW12 178 aaKnown RBP11.09□□□□□ -0.63
RPAIN-206ENST00000539417 TRGV1A0A0A0MS02 117 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 IGHV3-16A0A0C4DH30 117 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 FBLL1A6NHQ2 334 aaKnown RBP11.08□□□□□ -0.64
RPAIN-206ENST00000539417 PFN1P07737 140 aaKnown RBP11.08□□□□□ -0.64
RPAIN-206ENST00000539417 HOXA5P20719 270 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 PPT1P50897 306 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 TMEM88Q6PEY1 159 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 NHLRC2Q8NBF2 726 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 FMC1Q96HJ9 113 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 TCEAL7Q9BRU2 100 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 DERL1Q9BUN8 251 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 MANBALQ9NQG1 85 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 DNAH6Q9C0G6 4158 aa11.08□□□□□ -0.64
RPAIN-206ENST00000539417 TRBV6-1A0A0K0K1D8 114 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 F5H768 121 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 LY6G6CO95867 125 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 LTAP01374 205 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 UBE2G1P62253 170 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 ZNF415Q09FC8 603 aa11.07□□□□□ -0.64
RPAIN-206ENST00000539417 IGKV3D-20A0A0C4DH25 116 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 ATP5G1P05496 136 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 ZNF575Q86XF7 245 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 TRGV11A0A075B6L2 103 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 TOR2AQ5JU69 321 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 COX8CQ7Z4L0 72 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 C11orf52Q96A22 123 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 ZFP30Q9Y2G7 519 aa11.06□□□□□ -0.64
RPAIN-206ENST00000539417 TEX46H3BTG2 121 aa11.05□□□□□ -0.64
RPAIN-206ENST00000539417 SH2D1AO60880 128 aa11.05□□□□□ -0.64
RPAIN-206ENST00000539417 BCL2P10415 239 aa11.05□□□□□ -0.64
RPAIN-206ENST00000539417 LYPD6BQ8NI32 183 aa11.05□□□□□ -0.64
RPAIN-206ENST00000539417 SDF2L1Q9HCN8 221 aa11.05□□□□□ -0.64
RPAIN-206ENST00000539417 FABP5P3A8MUU1 101 aa11.04□□□□□ -0.64
RPAIN-206ENST00000539417 IGHV3-53P01767 116 aa11.04□□□□□ -0.64
RPAIN-206ENST00000539417 RPL35P42766 123 aaKnown RBP11.04□□□□□ -0.64
RPAIN-206ENST00000539417 MEF2BQ02080 365 aaPredicted RBP11.04□□□□□ -0.64
RPAIN-206ENST00000539417 NDUFAF3Q9BU61 184 aa11.04□□□□□ -0.64
RPAIN-206ENST00000539417 MLST8Q9BVC4 326 aa11.04□□□□□ -0.64
RPAIN-206ENST00000539417 TRGV2A0A075B6R0 118 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 RAB19A4D1S5 217 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 KRBOX1C9JBD0 128 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 M0R036 132 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 RNASE3P12724 160 aaKnown RBP11.03□□□□□ -0.64
RPAIN-206ENST00000539417 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 ZNF674Q2M3X9 581 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 POM121L12Q8N7R1 296 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 KCNS1Q96KK3 526 aa11.03□□□□□ -0.64
RPAIN-206ENST00000539417 A0A0J9YY99 117 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 IGLV2-8P01709 118 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 TCTAP57738 103 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 OR5I1Q13606 314 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 LGALS9BQ3B8N2 356 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 LGALS9CQ6DKI2 356 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 BAGE2Q86Y30 109 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 C18orf15Q96N68 181 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 MUC4Q99102 2169 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 VAX2Q9UIW0 290 aa11.02□□□□□ -0.65
RPAIN-206ENST00000539417 TRBV20OR9-2A0A075B6H5 130 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 IFNA1P01562 189 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 ORM1P02763 201 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 SFTA3P0C7M3 94 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 UQCC3Q6UW78 93 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 RASL10AQ92737 203 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 C9orf85Q96MD7 179 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 SPXQ9BT56 116 aa11.01□□□□□ -0.65
RPAIN-206ENST00000539417 TRAV26-1A0A087WT03 109 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 TMSB15BA0A087X1C1 80 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 GRIFINA4D1Z8 144 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 PGPEP1LA6NFU8 196 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 S100A9P06702 114 aaKnown RBP11□□□□□ -0.65
RPAIN-206ENST00000539417 CENPWQ5EE01 88 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 FAM162BQ5T6X4 162 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 ZNF479Q96JC4 524 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 FAM210BQ96KR6 192 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 DNAH10Q8IVF4 4471 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 B4DEV8 164 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 M0R2P5 195 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 RPL19P84098 196 aaKnown RBP11□□□□□ -0.65
RPAIN-206ENST00000539417 VSIG2Q96IQ7 327 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 TXNDC17Q9BRA2 123 aa11□□□□□ -0.65
RPAIN-206ENST00000539417 RBFOX3A6NFN3 312 aa10.99□□□□□ -0.65
RPAIN-206ENST00000539417 C9JCJ5 164 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms