RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 NRGNQ92686 78 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 RNF185Q96GF1 192 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 C20orf173Q96LM9 149 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 FAM19A4Q96LR4 140 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 UBE2E2Q96LR5 201 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 SPTAN1Q13813 2472 aaKnown RBP5.03□□□□□ -1.6
USP28-206ENST00000538224 MED13LQ71F56 2210 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 LOC389332A0A1B0GUA5 103 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 H3BVH4 76 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 M0R381 172 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 DUSP14O95147 198 aaKnown RBP5.02□□□□□ -1.61
USP28-206ENST00000538224 TNFRSF6BO95407 300 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 IGLL1P15814 213 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 TSPOP30536 169 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 SRSF1Q07955 248 aaKnown RBP eCLIP5.02□□□□□ -1.61
USP28-206ENST00000538224 SLC25A34Q6PIV7 304 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 Q6ZS46 218 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 ZNF575Q86XF7 245 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 ATOH7Q8N100 152 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 Q8N2B8 174 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 Q8N8P6 123 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 OR1N2Q8NGR9 330 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 OR2K2Q8NGT1 345 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 AP1S3Q96PC3 154 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 DPH3P1Q9H4G8 78 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 ZNF702PQ9H963 129 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 C11orf21Q9P2W6 132 aa5.02□□□□□ -1.61
USP28-206ENST00000538224 ZNF462Q96JM2 2506 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 COL12A1Q99715 3063 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 TRAV2A0A0B4J234 112 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 MUC21A0A0G2JKD1 596 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 MUC21A0A140T8X8 626 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 LINC01549A6NIU2 74 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 KLLNB2CW77 178 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 ATP5LO75964 103 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 NXPH4O95158 308 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 NCR2O95944 276 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 PRB4P10163 310 aaPredicted RBP5.01□□□□□ -1.61
USP28-206ENST00000538224 FCER1GP30273 86 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 SCGB2A2Q13296 93 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 PRR31Q5SQ13 230 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 MUC21Q5SSG8 566 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 FAM159AQ6UWV7 190 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 LINC00173Q6ZV60 143 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 DCANP1Q8TF63 244 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 IFI27L1Q96BM0 104 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 Q96MF0 132 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 CSTL1Q9H114 145 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 SCRT2Q9NQ03 307 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 PHLDA3Q9Y5J5 127 aa5.01□□□□□ -1.61
USP28-206ENST00000538224 A0A096LNJ9 63 aa5□□□□□ -1.61
USP28-206ENST00000538224 C7orf71A4D174 169 aa5□□□□□ -1.61
USP28-206ENST00000538224 SMKR1H3BMG3 65 aa5□□□□□ -1.61
USP28-206ENST00000538224 K7EQG2 157 aa5□□□□□ -1.61
USP28-206ENST00000538224 HOXA3O43365 443 aaPredicted RBP5□□□□□ -1.61
USP28-206ENST00000538224 RNASE4P34096 147 aaKnown RBP5□□□□□ -1.61
USP28-206ENST00000538224 ANXA2RQ3ZCQ2 193 aa5□□□□□ -1.61
USP28-206ENST00000538224 ORMDL2Q53FV1 153 aa5□□□□□ -1.61
USP28-206ENST00000538224 PRR9Q5T870 116 aa5□□□□□ -1.61
USP28-206ENST00000538224 LCNL1Q6ZST4 164 aa5□□□□□ -1.61
USP28-206ENST00000538224 RNASE8Q8TDE3 154 aaKnown RBP5□□□□□ -1.61
USP28-206ENST00000538224 ORAOV1Q8WV07 137 aa5□□□□□ -1.61
USP28-206ENST00000538224 WFDC12Q8WWY7 111 aa5□□□□□ -1.61
USP28-206ENST00000538224 C20orf78Q9BR46 151 aa5□□□□□ -1.61
USP28-206ENST00000538224 MSRB1Q9NZV6 116 aa5□□□□□ -1.61
USP28-206ENST00000538224 PEMTQ9UBM1 199 aa5□□□□□ -1.61
USP28-206ENST00000538224 TIMM8BQ9Y5J9 83 aaPredicted RBP5□□□□□ -1.61
USP28-206ENST00000538224 LRRK2Q5S007 2527 aa5□□□□□ -1.61
USP28-206ENST00000538224 UTP20O75691 2785 aaKnown RBP4.99□□□□□ -1.61
USP28-206ENST00000538224 CELSR2Q9HCU4 2923 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 IGKV3-7A0A075B6H7 116 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 IGHV4OR15-8A0A075B7B6 117 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 A0A087WW49 117 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 A0A0J9YX75 114 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 H0Y8G0 127 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 SMIM17P0DL12 118 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 EVI2AP22794 236 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 HOXD3P31249 432 aaPredicted RBP4.99□□□□□ -1.61
USP28-206ENST00000538224 RPL32P62910 135 aaKnown RBP4.99□□□□□ -1.61
USP28-206ENST00000538224 LAGE3Q14657 143 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 KIR3DS1Q14943 382 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 BATFQ16520 125 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 C12orf54Q6X4T0 127 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 FOXI2Q6ZQN5 318 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 NRACQ8N912 160 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 SYT8Q8NBV8 401 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 MAPK1IP1LQ8NDC0 245 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 SMIM2Q9BVW6 85 aa4.99□□□□□ -1.61
USP28-206ENST00000538224 IGLV2-18A0A075B6J9 118 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 hDV102S1A0JD36 115 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 CBY3A6NI87 242 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 F6UB75 175 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 LINC01619G3V211 115 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 J3KRW8 73 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 COX8AP10176 69 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 SYNJ2BPP57105 145 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 KRTAP10-9P60411 292 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 POM121L12Q8N7R1 296 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 OR9G4Q8NGQ1 327 aa4.98□□□□□ -1.61
USP28-206ENST00000538224 C4orf3Q8WVX3 66 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms