RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 RAB9AP51151 201 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 IGFL4Q6B9Z1 124 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 ZNF747Q9BV97 191 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 KLK15Q9H2R5 256 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 AAMDCQ9H7C9 122 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 AP5S1Q9NUS5 200 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 U3KQE9 123 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 IGHV3-66A0A0C4DH42 116 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 FAM231BA6NCW3 169 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 FSHBP01225 129 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 TRBV12-3P01733 135 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 MALP21145 153 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 CFHR3Q02985 330 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 KRTAP1-3Q8IUG1 177 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 MTURNQ8N3F0 131 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 HSPB8Q9UJY1 196 aa8.23□□□□□ -1.09
CLIP1-210ENST00000538120 A0A096LNJ9 63 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 A0A0U1RRA0 63 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 LOC389332A0A1B0GUA5 103 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 GAGE10A6NGK3 116 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 H3BUA1 57 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 ZNF207O43670 478 aaKnown RBP8.22□□□□□ -1.09
CLIP1-210ENST00000538120 IFI27P40305 119 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-210ENST00000538120 HIST1H1AQ02539 215 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-210ENST00000538120 OCIAD2Q56VL3 154 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.22□□□□□ -1.091e-9■■■■■ 46
CLIP1-210ENST00000538120 CENPEQ02224 2701 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 IGHV3OR16-13A0A075B7E8 117 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 TMSB15BA0A087X1C1 80 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 IGHV3-74A0A0B4J1X5 117 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 SIVA1O15304 175 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 IGLV1-40P01703 118 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 PRSS3P2Q8NHM4 247 aa8.22□□□□□ -1.09
CLIP1-210ENST00000538120 ANKRD17O75179 2603 aaKnown RBP8.21□□□□□ -1.09
CLIP1-210ENST00000538120 IGKV2-40A0A087WW87 121 aaPredicted RBP8.21□□□□□ -1.09
CLIP1-210ENST00000538120 CD5LO43866 347 aa8.21□□□□□ -1.09
CLIP1-210ENST00000538120 IGKV2D-40P01614 121 aaPredicted RBP8.21□□□□□ -1.09
CLIP1-210ENST00000538120 COX8AP10176 69 aa8.21□□□□□ -1.09
CLIP1-210ENST00000538120 OR8A1Q8NGG7 326 aa8.21□□□□□ -1.09
CLIP1-210ENST00000538120 C8orf49Q96NF6 230 aa8.21□□□□□ -1.09
CLIP1-210ENST00000538120 NAA38Q9BRA0 125 aaKnown RBP8.21□□□□□ -1.09
CLIP1-210ENST00000538120 MS4A6AQ9H2W1 248 aa8.21□□□□□ -1.09
CLIP1-210ENST00000538120 PTPN13Q12923 2485 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 IGHV3-49A0A0A0MS15 119 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 TMEM213A2RRL7 107 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 CSN1S1P47710 185 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 SAMD13Q5VXD3 122 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 LCNL1Q6ZST4 164 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 USMG5Q96IX5 58 aa8.21□□□□□ -1.1
CLIP1-210ENST00000538120 USP9YO00507 2555 aaPredicted RBP8.21□□□□□ -1.1
CLIP1-210ENST00000538120 GAGE12BA1L429 117 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 C7orf71A4D174 169 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 M0QXV9 152 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 TSPAN13O95857 204 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 UNQ9165/PRO28630Q6UXU0 137 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 FA2HQ7L5A8 372 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 METTL26Q96S19 204 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 VGLL1Q99990 258 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 PRAC2D3DTV9 90 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 D6R8Y8 96 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 IGHV3-11P01762 117 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 FGF6P10767 208 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 RIGQ13278 110 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 COX8CQ7Z4L0 72 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 CDIP1Q9H305 208 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 ZNF580Q9UK33 172 aa8.2□□□□□ -1.1
CLIP1-210ENST00000538120 NBPF19A0A087WUL8 3843 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 TRAV8-2A0A0B4J237 113 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 HIST2H2BCQ6DN03 193 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 C9orf139Q6ZV77 190 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 AMN1Q8IY45 258 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 OR10AG1Q8NH19 301 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 Q96MF0 132 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 SIGLEC8Q9NYZ4 499 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 TSSC4Q9Y5U2 329 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-210ENST00000538120 CR1P17927 2039 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 ZANQ9Y493 2812 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 OR11H12B2RN74 326 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 K7ERU9 68 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 TMEM97Q5BJF2 176 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 RNF182Q8N6D2 247 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 OR11H1Q8NG94 326 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 OR4X2Q8NGF9 303 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 OR11H2Q8NH07 326 aa8.19□□□□□ -1.1
CLIP1-210ENST00000538120 NDUFA4O00483 81 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 MRPL23Q16540 153 aaKnown RBP8.18□□□□□ -1.1
CLIP1-210ENST00000538120 LYZL1Q6UWQ5 148 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 Q6YL49 198 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 PRR25Q96S07 402 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 JMJD8Q96S16 334 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 SMKR1H3BMG3 65 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 CACNG7P62955 275 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 Q8TAT8 98 aa8.18□□□□□ -1.1
CLIP1-210ENST00000538120 CSPG4Q6UVK1 2322 aa8.17□□□□□ -1.1
CLIP1-210ENST00000538120 TENM4Q6N022 2769 aa8.17□□□□□ -1.1
CLIP1-210ENST00000538120 ERCC8Q13216 396 aa8.17□□□□□ -1.1
CLIP1-210ENST00000538120 C10orf99Q6UWK7 81 aa8.17□□□□□ -1.1
CLIP1-210ENST00000538120 GATD1Q8NB37 220 aa8.17□□□□□ -1.1
CLIP1-210ENST00000538120 ABCA12Q86UK0 2595 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms