RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-215	ENST00000537824	IGKV1-6	A0A0C4DH72	117 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	IGHV3-53	P01767	116 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	MLANA	Q16655	118 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	TMEM14B	Q9NUH8	114 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	PDE6H	Q13956	83 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	C20orf78	Q9BR46	151 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	CCDC179	H3BU77	68 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	NTN3	O00634	580 aa	Predicted RBP	4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	PFN2	P35080	140 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	RPL36A	P83881	106 aa	Known RBP	4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	SLC25A45	Q8N413	288 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	C3orf22	Q8N5N4	141 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	RPL36AL	Q969Q0	106 aa	Known RBP	4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824		B9A039	149 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	COLCA1	Q6ZS62	124 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824	NDUFB8	O95169	186 aa		4.55	□□□□□ -1.68
CSMD1-215	ENST00000537824		F6UB75	175 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	RNASE13	Q5GAN3	156 aa	Known RBP	4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	METRN	Q9UJH8	293 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	ATP5J2	P56134	94 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	CSRP2	Q16527	193 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824		M0QXV9	152 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824		I3L3M4	83 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	LTA	P01374	205 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	FAM120AOS	Q5T036	256 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	LINC00477	Q96M19	166 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	IGHV1-2	P23083	117 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	TRAV23DV6	A0A075B6W5	121 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	MPLKIP	Q8TAP9	179 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	IGLV3-32	A0A0A0MS00	114 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824		A0A1W2PRX2	142 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	NDUFA7	O95182	113 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	TRIP6	Q15654	476 aa	Known RBP	4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	STH	Q8IWL8	128 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	HS3ST6	Q96QI5	342 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	MSRB2	Q9Y3D2	182 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	C1orf162	Q8NEQ5	155 aa	Predicted RBP	4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	TP73-AS1	Q9UF72	201 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	SIGLEC9	Q9Y336	463 aa		4.54	□□□□□ -1.68
CSMD1-215	ENST00000537824	TRBV19	A0A075B6N1	114 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	IGHV3-16	A0A0C4DH30	117 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	C1orf195	Q5TG92	126 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	ORMDL1	Q9P0S3	153 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824		A4D1N5	150 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	RHOD	O00212	210 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	LYPD6	Q86Y78	171 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	FXYD5	Q96DB9	178 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	PYGO2	Q9BRQ0	406 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	RHOH	Q15669	191 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	LINC01620	Q4KN68	170 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	CFHR4	Q92496	578 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	ATP1A1-AS1	Q5TC04	95 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	NEU4	Q8WWR8	484 aa	Predicted RBP	4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	ATP5G1	P05496	136 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	CFP	P27918	469 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	RNF152	Q8N8N0	203 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	EFNA2	O43921	213 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	COX7B2	Q8TF08	81 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	CLEC2B	Q92478	149 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	FAM236D	A0A1B0GTK5	79 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824		E9PQ18	207 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	FAM236C	P0DP71	79 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	IGLC6	P0CF74	106 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	FUS	P35637	526 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	TMEM219	Q86XT9	240 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	C17orf100	A8MU93	164 aa		4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	SP7	Q8TDD2	431 aa	Predicted RBP	4.53	□□□□□ -1.68
CSMD1-215	ENST00000537824	THBD	P07204	575 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	SS18	Q15532	418 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	ZIC4	Q8N9L1	334 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	LINC01560	Q8TB33	94 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	RPL35A	P18077	110 aa	Known RBP	4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	TEX49	A0A1B0GTD5	131 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	IGKV1-16	P04430	117 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	GATA1	P15976	413 aa	Predicted RBP	4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	SDHAF1	A6NFY7	115 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824		Q6ZR03	302 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	CFHR1	Q03591	330 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	WFDC11	Q8NEX6	87 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	RPL39L	Q96EH5	51 aa	Known RBP	4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	TRBV7-1	A0A0A6YYK4	115 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	UQCRQ	O14949	82 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	SDIM1	Q6ZPB5	146 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	DTX2	Q86UW9	622 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	C9orf106	Q8NAJ2	232 aa		4.52	□□□□□ -1.69
CSMD1-215	ENST00000537824	NDUFC2-KCTD14	E9PQ53	114 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	LYNX1	G3V0Z9	82 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	LYNX1	P0DP58	116 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	C9orf139	Q6ZV77	190 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	KLHL30-AS1	Q8NEE0	82 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	TRBV10-2	A0A0K0K1G8	114 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	FAM240A	A0A1B0GVK7	77 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	TTTY13	Q9BZ97	58 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	LINC00643	Q86TS7	51 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	SMRP1	Q8NCR6	262 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	CCL19	Q99731	98 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	TCL1B	O95988	128 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	IGKV1-39	P01597	117 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	IGKV1D-39	P04432	117 aa		4.51	□□□□□ -1.69
CSMD1-215	ENST00000537824	MP68	P56378	58 aa		4.51	□□□□□ -1.69

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