RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 APOC3P02656 99 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 TCRBP04435 133 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 OR10J4P0C629 311 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 UBCP0CG48 685 aaKnown RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PRB4P10163 310 aaPredicted RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 MYL12AP19105 171 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 FGF7P21781 194 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 CBLN1P23435 193 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 KDELR2P33947 212 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 CRYBA4P53673 196 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 CCL18P55774 89 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 RRAS2P62070 204 aaPredicted RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 RAB11AP62491 216 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PAFAH1B2P68402 229 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 MRPS10P82664 201 aaKnown RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 DEFA5Q01523 94 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 RAB31Q13636 194 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 RSU1Q15404 277 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 NEDD8Q15843 81 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 SCGB2B2Q4G0G5 96 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PYY3Q5JQD4 70 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 XAF1Q6GPH4 301 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM144Q7Z5S9 345 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 TMED4Q7Z7H5 227 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 MSRB3Q8IXL7 192 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 HS3ST5Q8IZT8 346 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PXT1Q8NFP0 134 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 OR51T1Q8NGJ9 327 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 OTOSQ8NHW6 89 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 MCFD2Q8NI22 146 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 GNPDA2Q8TDQ7 276 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 DEFB104AQ8WTQ1 72 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 ORAOV1Q8WV07 137 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PP6455Q8WZ26 134 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 ARL11Q969Q4 196 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 SMIM8Q96KF7 97 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 GPER1Q99527 375 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 TSNAXQ99598 290 aaKnown RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 AGMATQ9BSE5 352 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 FAM103A1Q9BTL3 118 aaKnown RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 SNHG12Q9BXW3 62 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 FBXL15Q9H469 300 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 VSIRQ9H7M9 311 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 REEP1Q9H902 201 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 HRASLSQ9HDD0 168 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 SLC2A9Q9NRM0 540 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 SCN3BQ9NY72 215 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 MRPL27Q9P0M9 148 aaKnown RBP1.61□□□□□ -2.15
SYNE1-232ENST00000535081 WASHC3Q9Y3C0 194 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 UFC1Q9Y3C8 167 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 ENPP4Q9Y6X5 453 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 URGCP-MRPS24S4R325 110 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 V9GYS6 101 aa1.61□□□□□ -2.15
SYNE1-232ENST00000535081 PKHD1P08F94 4074 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 IGHV3-43A0A0B4J1X8 118 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 A0A0G2JND7 137 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 NBDYA0A0U1RRE5 68 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 A0A1B0GW64 132 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM213A2RRL7 107 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM189A5PLL7 270 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 A6NIN4 97 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 BBIP1A8MTZ0 92 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 ZNF736B4DX44 427 aaPredicted RBP1.6□□□□□ -2.15
SYNE1-232ENST00000535081 DISC1C4P0D8 188 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 F6UZH7 168 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 H3BN98 237 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 K7ERU9 68 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SSNA1O43805 119 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 ADAP1O75689 374 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 NDUFA3O95167 84 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SOX14O95416 240 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 MPC2O95563 127 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 MT-ND4LP03901 98 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 CD2P06729 351 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 NMBP08949 121 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 OR5AC1P0C628 307 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SPART-AS1P0CW21 52 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 S100A7P31151 101 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 EIF5AP63241 154 aaKnown RBP1.6□□□□□ -2.15
SYNE1-232ENST00000535081 RHOGP84095 191 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 PEA15Q15121 130 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SURF2Q15527 256 aaPredicted RBP1.6□□□□□ -2.15
SYNE1-232ENST00000535081 VAMP3Q15836 100 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 LGALSLQ3ZCW2 172 aaPredicted RBP1.6□□□□□ -2.15
SYNE1-232ENST00000535081 C10orf91Q5T1B1 145 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 AKR1C8PQ5T2L2 129 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SAMD13Q5VXD3 122 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM42Q69YG0 159 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 EPGNQ6UW88 154 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 FA2HQ7L5A8 372 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SSX6Q7RTT6 188 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 GPHB5Q86YW7 130 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 FUNDC1Q8IVP5 155 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 BOD1L2Q8IYS8 172 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 OR13C8Q8NGS7 320 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 OR10K1Q8NGX5 313 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 ASB13Q8WXK3 278 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SFRP2Q96HF1 295 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 IGF2BP2-AS1Q96M15 143 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 DERL3Q96Q80 235 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms