RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 MGAT4CQ9UBM8 478 aa4.04□□□□□ -1.76
CD44-237ENST00000534082 VAX2Q9UIW0 290 aa4.04□□□□□ -1.76
CD44-237ENST00000534082 PXMP4Q9Y6I8 212 aa4.04□□□□□ -1.76
CD44-237ENST00000534082 TEX13DA0A0J9YY54 714 aaPredicted RBP4.03□□□□□ -1.76
CD44-237ENST00000534082 USP17L23D6RBM5 183 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 PRSS46E5RG02 174 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 TNFAIP8O95379 198 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 IL5P05113 134 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 OR10J4P0C629 311 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 IAPPP10997 89 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 CRISP2P16562 243 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 RHOHQ15669 191 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 UBE2NLQ5JXB2 153 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 DGAT2L7PQ6IED9 249 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 SPINK6Q6UWN8 80 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 DPPA3Q6W0C5 159 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 S100A7AQ86SG5 101 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 SLC25A29Q8N8R3 303 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 ZFAND1Q8TCF1 268 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 UBE2WQ96B02 151 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 RNF185Q96GF1 192 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 C2orf88Q9BSF0 95 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 PRADC1Q9BSG0 188 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 NAA60Q9H7X0 242 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 KLK12Q9UKR0 248 aa4.03□□□□□ -1.76
CD44-237ENST00000534082 STRAPQ9Y3F4 350 aaKnown RBP4.03□□□□□ -1.76
CD44-237ENST00000534082 PRSS1P07477 247 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 SEC11BP0C7V7 166 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 CHTF8P0CG12 524 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 IGLC2P0DOY2 106 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 CCR6P51684 374 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 PLP1P60201 277 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 RPL19P84098 196 aaKnown RBP4.02□□□□□ -1.77
CD44-237ENST00000534082 PRR4Q16378 134 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 RNASE10Q5GAN6 216 aaKnown RBP4.02□□□□□ -1.77
CD44-237ENST00000534082 MUC21Q5SSG8 566 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 ATRAIDQ6UW56 229 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 ZFAND2AQ8N6M9 145 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 SPACA4Q8TDM5 124 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 SAT2Q96F10 170 aaPredicted RBP4.02□□□□□ -1.77
CD44-237ENST00000534082 DPH3Q96FX2 82 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 LINC00477Q96M19 166 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 PACRGQ96M98 296 aaPredicted RBP4.02□□□□□ -1.77
CD44-237ENST00000534082 SRRQ9GZT4 340 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 ARL6Q9H0F7 186 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 ARV1Q9H2C2 271 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 PLAC8Q9NZF1 115 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 URGCP-MRPS24S4R325 110 aa4.02□□□□□ -1.77
CD44-237ENST00000534082 TRBV6-4A0A1B0GX49 114 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 SMCO3A2RU48 225 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 FBLL1A6NHQ2 334 aaKnown RBP4.01□□□□□ -1.77
CD44-237ENST00000534082 FAM25AB3EWG3 89 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 FAM25CB3EWG5 89 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 FAM25GB3EWG6 89 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 H3BQ15 152 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 M0R3E3 92 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 TAAR5O14804 337 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 TNFRSF6BO95407 300 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 NMBP08949 121 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 AKR1C4P17516 323 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 SELENOTP62341 195 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 RBX1P62877 108 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 GAGE1Q13065 139 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 BAK1Q16611 211 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 TMEM183BQ1AE95 376 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 PATE2Q6UY27 113 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 LINC00305Q7Z4B0 112 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 NIT1Q86X76 327 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 BPIFA4PQ86YQ2 179 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 SNX29P2Q8IUI4 249 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 TMEM183AQ8IXX5 376 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 SAMD12Q8N8I0 201 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 OR2D3Q8NGH3 330 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 MARCH1Q8TCQ1 289 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 GTSF1Q8WW33 167 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 NRG4Q8WWG1 115 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 PRRT1Q99946 306 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 C1orf43Q9BWL3 253 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 AGPAT4-IT1Q9H0P7 198 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 SH3BGRL3Q9H299 93 aa4.01□□□□□ -1.77
CD44-237ENST00000534082 TRGV11A0A075B6L2 103 aa4□□□□□ -1.77
CD44-237ENST00000534082 TRAV26-2A0A0B4J265 109 aa4□□□□□ -1.77
CD44-237ENST00000534082 A0A1W2PPV4 95 aa4□□□□□ -1.77
CD44-237ENST00000534082 FAM231BA6NCW3 169 aa4□□□□□ -1.77
CD44-237ENST00000534082 GAGE12HA6NDE8 117 aa4□□□□□ -1.77
CD44-237ENST00000534082 B5MCH6 92 aa4□□□□□ -1.77
CD44-237ENST00000534082 DIRC3C9JPN6 131 aa4□□□□□ -1.77
CD44-237ENST00000534082 H7C1H1 209 aa4□□□□□ -1.77
CD44-237ENST00000534082 M0R2P5 195 aa4□□□□□ -1.77
CD44-237ENST00000534082 CCSO14618 274 aa4□□□□□ -1.77
CD44-237ENST00000534082 ZNF253O75346 499 aa4□□□□□ -1.77
CD44-237ENST00000534082 HLA-DQA1P01909 254 aa4□□□□□ -1.77
CD44-237ENST00000534082 CD3DP04234 171 aa4□□□□□ -1.77
CD44-237ENST00000534082 S100A8P05109 93 aa4□□□□□ -1.77
CD44-237ENST00000534082 RAB31Q13636 194 aa4□□□□□ -1.77
CD44-237ENST00000534082 SCGB2B2Q4G0G5 96 aa4□□□□□ -1.77
CD44-237ENST00000534082 SPANXN2Q5MJ10 180 aa4□□□□□ -1.77
CD44-237ENST00000534082 OR52I2Q8NH67 350 aa4□□□□□ -1.77
CD44-237ENST00000534082 MRPL53Q96EL3 112 aaKnown RBP4□□□□□ -1.77
CD44-237ENST00000534082 C14orf166Q9Y224 244 aaKnown RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms