RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MOB4Q9Y3A3 225 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 H3BVH4 76 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 IGF1P05019 195 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 RPL24P83731 157 aaKnown RBP14.67□□□□□ -0.06
VPS28-213ENST00000530983 LAGE3Q14657 143 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 CLEC2AQ6UVW9 174 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 SMPXQ9UHP9 88 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 IGHV3OR16-10A0A075B7F0 116 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 TMEM8BA6NDV4 472 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 FAM223BA6NKX1 122 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 DPM2O94777 84 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 FAM223AQ8IWN6 122 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 ATP6V0BQ99437 205 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 HIGD1BQ9P298 99 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 ZC2HC1BQ5TFG8 222 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 SAMD13Q5VXD3 122 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 C9orf139Q6ZV77 190 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 GTSCR1Q86UQ5 136 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 GPHB5Q86YW7 130 aa14.66□□□□□ -0.06
VPS28-213ENST00000530983 K7ERJ3 54 aa14.65□□□□□ -0.06
VPS28-213ENST00000530983 UNQ9165/PRO28630Q6UXU0 137 aa14.65□□□□□ -0.06
VPS28-213ENST00000530983 TRBV12-3P01733 135 aa14.65□□□□□ -0.06
VPS28-213ENST00000530983 ARL3P36405 182 aa14.65□□□□□ -0.06
VPS28-213ENST00000530983 CRIP2P52943 208 aaPredicted RBP14.65□□□□□ -0.06
VPS28-213ENST00000530983 MRPL35Q9NZE8 188 aaKnown RBP14.65□□□□□ -0.06
VPS28-213ENST00000530983 LENEPQ9Y5L5 61 aa14.64□□□□□ -0.07
VPS28-213ENST00000530983 TRAV40A0A0B4J280 105 aa14.64□□□□□ -0.07
VPS28-213ENST00000530983 PHLDA1Q8WV24 401 aaPredicted RBP14.64□□□□□ -0.07
VPS28-213ENST00000530983 CHAC1Q9BUX1 264 aa14.64□□□□□ -0.07
VPS28-213ENST00000530983 J3KRW8 73 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 MYOZ3Q8TDC0 251 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 TMEM160Q9NX00 188 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 TRBV25-1A0A075B6N4 114 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 LY6DQ14210 128 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 BRD3OSQ6XYD6 125 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 ZFAND2AQ8N6M9 145 aa14.63□□□□□ -0.07
VPS28-213ENST00000530983 C19orf84I3L1E1 186 aa14.62□□□□□ -0.07
VPS28-213ENST00000530983 MRAP2Q96G30 205 aa14.62□□□□□ -0.07
VPS28-213ENST00000530983 SOCS3O14543 225 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 SRSF1Q07955 248 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS28-213ENST00000530983 SPTBN4Q9H254 2564 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 IGHV1-69DA0A0B4J2H0 117 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 IGHV1-69P01742 117 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 IGHV4-39P01824 125 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 AZU1P20160 251 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 DEFB1P60022 68 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 SMIM2Q9BVW6 85 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 GTSF1LQ9H1H1 148 aa14.61□□□□□ -0.07
VPS28-213ENST00000530983 A0A087WX48 190 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 SPRY2O43597 315 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 HLA-DRB4P13762 266 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 LINC00477Q96M19 166 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 HLA-DRB4X5D2U9 266 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 K7EMI3 77 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 NDUFA4O00483 81 aa14.6□□□□□ -0.07
VPS28-213ENST00000530983 NHP2Q9NX24 153 aaKnown RBP14.59□□□□□ -0.07
VPS28-213ENST00000530983 ITPR1Q14643 2758 aa14.59□□□□□ -0.07
VPS28-213ENST00000530983 M0R381 172 aa14.59□□□□□ -0.07
VPS28-213ENST00000530983 SCGB1A1P11684 91 aa14.59□□□□□ -0.07
VPS28-213ENST00000530983 OR10J6PQ8NGY7 276 aa14.59□□□□□ -0.07
VPS28-213ENST00000530983 NCOR2Q9Y618 2525 aa14.58□□□□□ -0.07
VPS28-213ENST00000530983 TRAV21A0A0B4J279 112 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 MAPKAPK5-AS1Q8N8E1 139 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 PRORYQ9H606 182 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 CHD8Q9HCK8 2581 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 SPTAN1Q13813 2472 aaKnown RBP14.58□□□□□ -0.08
VPS28-213ENST00000530983 OVOL1O14753 267 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 RASL10AQ92737 203 aa14.58□□□□□ -0.08
VPS28-213ENST00000530983 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.57□□□□□ -0.08
VPS28-213ENST00000530983 SMAGPQ0VAQ4 97 aa14.57□□□□□ -0.08
VPS28-213ENST00000530983 WFDC2Q14508 124 aa14.57□□□□□ -0.08
VPS28-213ENST00000530983 CEND1Q8N111 149 aa14.57□□□□□ -0.08
VPS28-213ENST00000530983 SIGMAR1Q99720 223 aa14.57□□□□□ -0.08
VPS28-213ENST00000530983 TM2D2Q9BX73 214 aa14.57□□□□□ -0.08
VPS28-213ENST00000530983 TSSC4Q9Y5U2 329 aaPredicted RBP14.57□□□□□ -0.08
VPS28-213ENST00000530983 E9PLD3 99 aa14.56□□□□□ -0.08
VPS28-213ENST00000530983 IGHV3-11P01762 117 aa14.56□□□□□ -0.08
VPS28-213ENST00000530983 PLNP26678 52 aa14.56□□□□□ -0.08
VPS28-213ENST00000530983 SUMO2P61956 95 aaKnown RBP14.56□□□□□ -0.08
VPS28-213ENST00000530983 ANXA2RQ3ZCQ2 193 aa14.56□□□□□ -0.08
VPS28-213ENST00000530983 FAM19A4Q96LR4 140 aa14.56□□□□□ -0.08
VPS28-213ENST00000530983 SPANXB1Q9NS25 103 aaPredicted RBP14.56□□□□□ -0.08
VPS28-213ENST00000530983 F6UB75 175 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 S100A4P26447 101 aaKnown RBP14.55□□□□□ -0.08
VPS28-213ENST00000530983 ASIPP42127 132 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 C14orf178Q8N769 122 aaPredicted RBP14.55□□□□□ -0.08
VPS28-213ENST00000530983 RPL39LQ96EH5 51 aaKnown RBP14.55□□□□□ -0.08
VPS28-213ENST00000530983 DPH3P1Q9H4G8 78 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 TRAV12-1A0A0B4J245 112 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 IGHV4-38-2P0DP08 117 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 LY6EQ16553 131 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 KLK15Q9H2R5 256 aa14.55□□□□□ -0.08
VPS28-213ENST00000530983 IGHV4-61A0A0C4DH41 118 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 ORMDL2Q53FV1 153 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 PHLDA3Q9Y5J5 127 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 GAGE12HA6NDE8 117 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 IGLL5B9A064 214 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 RNF223E7ERA6 249 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 IGHG2P01859 326 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 CD300EQ496F6 205 aaPredicted RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 254.4 ms