RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IGKV3D-20A0A0C4DH25 116 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 A0A1B0GUT8 65 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 C7orf71A4D174 169 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 KNCNA6PVL3 124 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 HLA-DQA1P01909 254 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 S100A8P05109 93 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 HBBP68871 147 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 RIGQ13278 110 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 AMTNQ6UX39 209 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 A0A1B0GXF2 115 aa15.67■□□□□ 0.1
VPS28-212ENST00000530836 F2Z2F3 143 aa15.67■□□□□ 0.1
VPS28-212ENST00000530836 J3KRW8 73 aa15.67■□□□□ 0.1
VPS28-212ENST00000530836 FER1L6-AS1Q8NA97 138 aa15.67■□□□□ 0.1
VPS28-212ENST00000530836 SNURFLB1AK76 121 aa15.66■□□□□ 0.1
VPS28-212ENST00000530836 IGKV3-20P01619 116 aa15.66■□□□□ 0.1
VPS28-212ENST00000530836 IGLC6P0CF74 106 aa15.66■□□□□ 0.1
VPS28-212ENST00000530836 CTRLP40313 264 aa15.66■□□□□ 0.1
VPS28-212ENST00000530836 KPRPQ5T749 579 aaPredicted RBP15.66■□□□□ 0.1
VPS28-212ENST00000530836 C11orf21Q9P2W6 132 aa15.66■□□□□ 0.1
VPS28-212ENST00000530836 PHOX2AO14813 284 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 FABP9Q0Z7S8 132 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 TMEM136Q6ZRR5 245 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 KCNS1Q96KK3 526 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 LYZL1Q6UWQ5 148 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 ZNF575Q86XF7 245 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 FRZBQ92765 325 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 TPPP3Q9BW30 176 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 FBN3Q75N90 2809 aa15.65■□□□□ 0.1
VPS28-212ENST00000530836 RAB4BP61018 213 aa15.64■□□□□ 0.09
VPS28-212ENST00000530836 STHQ8IWL8 128 aa15.64■□□□□ 0.09
VPS28-212ENST00000530836 ZFP82Q8N141 532 aa15.64■□□□□ 0.09
VPS28-212ENST00000530836 MRPL18Q9H0U6 180 aaKnown RBP15.64■□□□□ 0.09
VPS28-212ENST00000530836 AMBPP02760 352 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 EGFEM1PQ0D2K5 195 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 SPINK13Q1W4C9 94 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 GFI1BQ5VTD9 330 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 FAM159AQ6UWV7 190 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 CNFNQ9BYD5 112 aa15.63■□□□□ 0.09
VPS28-212ENST00000530836 GRIFINA4D1Z8 144 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 M0R2Z0 102 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 ZNF324O75467 553 aaPredicted RBP15.62■□□□□ 0.09
VPS28-212ENST00000530836 S100A6P06703 90 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 CAMPP49913 170 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 DNLZQ5SXM8 178 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 NAGKQ9UJ70 344 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 SORL1Q92673 2214 aa15.62■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BKO60814 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BJP06899 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 OR5AL1P0C617 328 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 ARMS2P0C7Q2 107 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 TRGC1P0CF51 173 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 MED14OSP0DP75 135 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BOP23527 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BBP33778 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BDP58876 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 NUTF2P61970 127 aaKnown RBP15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BCP62807 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 KIR3DS1Q14943 382 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 ZNF124Q15973 351 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST2H2BEQ16778 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 TDRG1Q3Y452 100 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 ANXA2RQ3ZCQ2 193 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BHQ93079 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BNQ99877 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 HIST1H2BMQ99879 126 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 SSBP4Q9BWG4 385 aaPredicted RBP15.61■□□□□ 0.09
VPS28-212ENST00000530836 TRAV12-3A0A0B4J271 114 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 FRMD6-AS1P0C7T7 363 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 ASIPP42127 132 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 KRTAP10-11P60412 298 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 GATD1Q8NB37 220 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 C20orf144Q9BQM9 153 aa15.61■□□□□ 0.09
VPS28-212ENST00000530836 ZMAT5Q9UDW3 170 aaKnown RBP15.61■□□□□ 0.09
VPS28-212ENST00000530836 APCSP02743 223 aa15.6■□□□□ 0.09
VPS28-212ENST00000530836 Q6ZQT7 251 aa15.6■□□□□ 0.09
VPS28-212ENST00000530836 TRPT1Q86TN4 253 aaKnown RBP15.6■□□□□ 0.09
VPS28-212ENST00000530836 TRAV12-2A0A075B6T6 113 aa15.59■□□□□ 0.09
VPS28-212ENST00000530836 SNAI2O43623 268 aa15.59■□□□□ 0.09
VPS28-212ENST00000530836 CD7P09564 240 aa15.59■□□□□ 0.09
VPS28-212ENST00000530836 S100A4P26447 101 aaKnown RBP15.59■□□□□ 0.09
VPS28-212ENST00000530836 CACNG7P62955 275 aa15.58■□□□□ 0.09
VPS28-212ENST00000530836 GTSCR1Q86UQ5 136 aa15.58■□□□□ 0.09
VPS28-212ENST00000530836 C19orf73Q9NVV2 129 aa15.58■□□□□ 0.09
VPS28-212ENST00000530836 RBMY1BA6NDE4 496 aaKnown RBP15.57■□□□□ 0.08
VPS28-212ENST00000530836 RBMY1EA6NEQ0 496 aaKnown RBP15.57■□□□□ 0.08
VPS28-212ENST00000530836 RBMY1DP0C7P1 496 aaKnown RBP15.57■□□□□ 0.08
VPS28-212ENST00000530836 MUC21Q5SSG8 566 aa15.57■□□□□ 0.08
VPS28-212ENST00000530836 ZNF493Q6ZR52 646 aa15.57■□□□□ 0.08
VPS28-212ENST00000530836 MEGF8Q7Z7M0 2845 aa15.57■□□□□ 0.08
VPS28-212ENST00000530836 CRXO43186 299 aaPredicted RBP15.57■□□□□ 0.08
VPS28-212ENST00000530836 IGHV4-4A0A075B6R2 117 aa15.56■□□□□ 0.08
VPS28-212ENST00000530836 IGHV1OR15-1A0A075B7D0 117 aa15.56■□□□□ 0.08
VPS28-212ENST00000530836 NTF3P20783 257 aa15.56■□□□□ 0.08
VPS28-212ENST00000530836 TWIST1Q15672 202 aa15.56■□□□□ 0.08
VPS28-212ENST00000530836 AGRNO00468 2067 aa15.55■□□□□ 0.08
VPS28-212ENST00000530836 INSP01308 110 aa15.55■□□□□ 0.08
VPS28-212ENST00000530836 FXYD7P58549 80 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 SLAQ13239 276 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 DNAH3Q8TD57 4116 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms