RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 TNP2Q05952 138 aa9.18□□□□□ -0.94
VPS28-211ENST00000530790 CYB561D1Q8N8Q1 229 aa9.18□□□□□ -0.94
VPS28-211ENST00000530790 PCNPQ8WW12 178 aaKnown RBP9.18□□□□□ -0.94
VPS28-211ENST00000530790 KRTAP1-5Q9BYS1 174 aa9.18□□□□□ -0.94
VPS28-211ENST00000530790 TRAV4A0A0B4J268 109 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 CTXND1A0A1B0GTU2 59 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 FBLL1A6NHQ2 334 aaKnown RBP9.17□□□□□ -0.94
VPS28-211ENST00000530790 G3V3Q6 166 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 M0R2P5 195 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 ARPC5O15511 151 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 GNRH2O43555 120 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 MED14OSP0DP75 135 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 SUMO1P63165 101 aaKnown RBP9.17□□□□□ -0.94
VPS28-211ENST00000530790 FLI1Q01543 452 aaPredicted RBP9.17□□□□□ -0.94
VPS28-211ENST00000530790 MRPL23Q16540 153 aaKnown RBP9.17□□□□□ -0.94
VPS28-211ENST00000530790 AKR1C8PQ5T2L2 129 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 TMEM75Q8N9X5 138 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 ZNF479Q96JC4 524 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 EPDR1Q9UM22 224 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 PSG8Q9UQ74 426 aa9.17□□□□□ -0.94
VPS28-211ENST00000530790 MUC4Q99102 2169 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 A0A1W2PRE2 83 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 TAAR5O14804 337 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 NXPH4O95158 308 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 GCGP01275 180 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 SRIP30626 198 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 ZNF726P1Q15940 193 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 PRNTQ86SH4 94 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 OR4C5Q8NGB2 326 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 KIAA1109Q2LD37 5005 aa9.16□□□□□ -0.94
VPS28-211ENST00000530790 PKD1P98161 4303 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 C9JCJ5 164 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 SIVA1O15304 175 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 IGLV2-11P01706 119 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 ORM1P02763 201 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 PFN1P07737 140 aaKnown RBP9.15□□□□□ -0.94
VPS28-211ENST00000530790 BTF3P20290 206 aaKnown RBP9.15□□□□□ -0.94
VPS28-211ENST00000530790 SMUG1Q53HV7 270 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 SAPCD1Q5SSQ6 148 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 NEGR1Q7Z3B1 354 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 ZNF575Q86XF7 245 aa9.15□□□□□ -0.94
VPS28-211ENST00000530790 K7EQD1 137 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 IFNA7P01567 189 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 GYPEP15421 78 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 PPT1P50897 306 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 ZNF80P51504 273 aaPredicted RBP9.14□□□□□ -0.95
VPS28-211ENST00000530790 UBE2G2P60604 165 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 TXNDC17Q9BRA2 123 aa9.14□□□□□ -0.95
VPS28-211ENST00000530790 MAP1LC3B2A6NCE7 125 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 C16orf90A8MZG2 172 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 SMLR1H3BR10 107 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 FGF8P55075 233 aaPredicted RBP9.13□□□□□ -0.95
VPS28-211ENST00000530790 LYPD5Q6UWN5 251 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 NKX6-2Q9C056 277 aaPredicted RBP9.13□□□□□ -0.95
VPS28-211ENST00000530790 MAP1LC3BQ9GZQ8 125 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 CYTL1Q9NRR1 136 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 C11orf21Q9P2W6 132 aa9.13□□□□□ -0.95
VPS28-211ENST00000530790 TRAV34A0A0B4J273 112 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 PEX7O00628 323 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 LINC00315P59091 139 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 ZNF345Q14585 488 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 ZNF876PQ49A33 203 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 Q86TA4 180 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 ARL2-SNX15V9GYD0 113 aa9.12□□□□□ -0.95
VPS28-211ENST00000530790 FAM74A7A6NL05 159 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 GATA1P15976 413 aaPredicted RBP9.11□□□□□ -0.95
VPS28-211ENST00000530790 STOML3Q8TAV4 291 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 HIST1H2BAQ96A08 127 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 LINC00479Q96M42 142 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 C9orf85Q96MD7 179 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 DNAH11Q96DT5 4516 aa9.11□□□□□ -0.95
VPS28-211ENST00000530790 SH2D6Q7Z4S9 175 aa9.1□□□□□ -0.95
VPS28-211ENST00000530790 KCNRGQ8N5I3 272 aa9.1□□□□□ -0.95
VPS28-211ENST00000530790 NHLRC2Q8NBF2 726 aa9.1□□□□□ -0.95
VPS28-211ENST00000530790 LY96Q9Y6Y9 160 aa9.1□□□□□ -0.95
VPS28-211ENST00000530790 DYNC1H1Q14204 4646 aaKnown RBP9.09□□□□□ -0.95
VPS28-211ENST00000530790 TRAV9-2A0A087WT02 112 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 LOC100131303A0A0U1RQF7 123 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 CIDEAO60543 219 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 RNASE3P12724 160 aaKnown RBP9.09□□□□□ -0.95
VPS28-211ENST00000530790 S100A4P26447 101 aaKnown RBP9.09□□□□□ -0.95
VPS28-211ENST00000530790 ASIPP42127 132 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 UBE2G1P62253 170 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 ZNF506Q5JVG8 444 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 FMC1Q96HJ9 113 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 TCEAL7Q9BRU2 100 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 PRADC1Q9BSG0 188 aa9.09□□□□□ -0.95
VPS28-211ENST00000530790 KANTRA0A1W2PQU2 76 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 FABP5P3A8MUU1 101 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 RS1O15537 224 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 BCL2L11O43521 198 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 FHITP49789 147 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 RHOHQ15669 191 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 DPPA3Q6W0C5 159 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 SPATA12Q7Z6I5 190 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 WFDC10BQ8IUB3 73 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 PTH2Q96A98 100 aa9.08□□□□□ -0.96
VPS28-211ENST00000530790 IGHV3-73A0A0B4J1V6 119 aa9.07□□□□□ -0.96
VPS28-211ENST00000530790 A0A0D9SG52 128 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms