RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 FAM236BA0A1B0GV22 79 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 BBIP1A8MTZ0 92 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 ZNF727A8MUV8 499 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 KRASP01116 189 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 IGHV1-8P0DP01 117 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 CRHBPP24387 322 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 S100A4P26447 101 aaKnown RBP3.13□□□□□ -1.91
CD44-220ENST00000525688 RPL30P62888 115 aaKnown RBP3.13□□□□□ -1.91
CD44-220ENST00000525688 QRFPP83859 136 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 HSD52Q0P140 79 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 DIAPH2-AS1Q14236 149 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 LINC01554Q52M75 96 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 PABPC1L2AQ5JQF8 200 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 MEIG1Q5JSS6 88 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 ZNF880Q6PDB4 577 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 LCN15Q6UWW0 184 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 PHF5AQ7RTV0 110 aaKnown RBP3.13□□□□□ -1.91
CD44-220ENST00000525688 CLECL1Q8IZS7 167 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 TEX29Q8N6K0 151 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 SUMF2Q8NBJ7 301 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 ADAT1Q9BUB4 502 aaKnown RBP3.13□□□□□ -1.91
CD44-220ENST00000525688 DPY30Q9C005 99 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 RERGLQ9H628 205 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 SCP2D1Q9UJQ7 156 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 DNAJC13O75165 2243 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 DIDO1Q9BTC0 2240 aaKnown RBP3.13□□□□□ -1.91
CD44-220ENST00000525688 ICE1Q9Y2F5 2266 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 NBPF19A0A087WUL8 3843 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 PCNX1Q96RV3 2341 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 MAP1AP78559 2803 aaPredicted RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 NOTCH2Q04721 2471 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 NUP214P35658 2090 aaPredicted RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 NINQ8N4C6 2090 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 TRAV27A0A087WT01 109 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 IGLV3-32A0A0A0MS00 114 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 IGHV3-49A0A0A0MS15 119 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 TRGV5A0A0B4J1U4 118 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 IGKV1-9A0A0C4DH69 117 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 A8MU10 97 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 LEUTXA8MZ59 168 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 H3BMG7 143 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 CCDC179H3BU77 68 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 EDF1O60869 148 aaKnown RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 APCSP02743 223 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 HMGN2P05204 90 aaKnown RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 CXCL1P09341 107 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 BRS3P32247 399 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 S100A3P33764 101 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 SRP14P37108 136 aaKnown RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 CSN1S1P47710 185 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 UBE2BP63146 152 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 GTF3C1Q12789 2109 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 MYO7BQ6PIF6 2116 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 C15orf56Q8N910 161 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 ITLN2Q8WWU7 325 aaPredicted RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 PLA2G12AQ9BZM1 189 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 CELA1Q9UNI1 258 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 MPC1Q9Y5U8 109 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 NCKAP5O14513 1909 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 CELSR1Q9NYQ6 3014 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 CSMD2Q7Z408 3487 aa3.12□□□□□ -1.91
CD44-220ENST00000525688 NCOA6Q14686 2063 aaPredicted RBP3.12□□□□□ -1.91
CD44-220ENST00000525688 ABCA12Q86UK0 2595 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 ANKRD17O75179 2603 aaKnown RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 OTOGQ6ZRI0 2925 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 TRBV27A0A0K0K1C4 114 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 A0A1W2PQD3 144 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 C7orf71A4D174 169 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 OR2T8A6NH00 312 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 C17orf51A8MQB3 221 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 A8MWV9 139 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 C19orf84I3L1E1 186 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 CPSF4O95639 269 aaKnown RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 CGB3P0DN86 165 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 CGB7P0DN87 165 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 CRYBB3P26998 211 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 DYNLT3P51808 116 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 POLR2JP52435 117 aaKnown RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 DSCR4P56555 118 aaPredicted RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 YPEL3P61236 119 aaPredicted RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 EIF5AP63241 154 aaKnown RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 HBBP68871 147 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 FUT5Q11128 374 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 HES1Q14469 280 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 FAM104BQ5XKR9 115 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 AMTNQ6UX39 209 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 RPRMLQ8N4K4 120 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 OR10G2Q8NGC3 310 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 OR5D16Q8NGK9 328 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 OR8D4Q8NGM9 314 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 MRPL32Q9BYC8 188 aaKnown RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 SLC39A9Q9NUM3 307 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 PHLDA3Q9Y5J5 127 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 FAM215AQ9Y5M1 114 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 IER3IP1Q9Y5U9 82 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 V9GYS6 101 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 HRNRQ86YZ3 2850 aaPredicted RBP3.11□□□□□ -1.91
CD44-220ENST00000525688 MED12Q93074 2177 aa3.11□□□□□ -1.91
CD44-220ENST00000525688 FREM3P0C091 2139 aa3.1□□□□□ -1.91
CD44-220ENST00000525688 PDZD2O15018 2839 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 208 ms