RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 Q6ZSR3 168 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 SCN2AQ99250 2005 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 ZC2HC1BQ5TFG8 222 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 C2orf82Q6UX34 121 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 TMEM263Q8WUH6 116 aaKnown RBP3.3□□□□□ -1.88
VCAN-209ENST00000513016 NDUFA12Q9UI09 145 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 SCN8AQ9UQD0 1980 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 TMEM213A2RRL7 107 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 MAJINQ3KP22 176 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 WDR81Q562E7 1941 aa3.3□□□□□ -1.88
VCAN-209ENST00000513016 NDUFS6O75380 124 aaKnown RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRB4P10163 310 aaPredicted RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 CLPSL2Q6UWE3 100 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 ZC2HC1AQ96GY0 325 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 COL6A6A6NMZ7 2263 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 ZNF318Q5VUA4 2279 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 DEFB131BA0A096LNP1 70 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 DEFB104AQ8WTQ1 72 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 C7orf33Q8WU49 177 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 C1orf147Q96MC9 270 aaPredicted RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 F6UB75 175 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 NDUFB1O75438 58 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 NDUFA7O95182 113 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 FXYD5Q96DB9 178 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 ZNF625Q96I27 306 aaPredicted RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 DSCR8Q96T75 97 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 ARHGEF17Q96PE2 2063 aaPredicted RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 TRAV8-3A0A0A6YYJ7 113 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 TRBV10-1A0A0K0K1A3 114 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 H3BUT2 72 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 SDK2Q58EX2 2172 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 K7EIM0 57 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 GAGE2BQ13066 116 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 MRPL51Q4U2R6 128 aaKnown RBP3.29□□□□□ -1.88
VCAN-209ENST00000513016 GAGE2EQ4V326 116 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 SUMO4Q6EEV6 95 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 ZFP2Q6ZN57 461 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 BOD1L2Q8IYS8 172 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 DEFB125Q8N687 156 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 B9D2Q9BPU9 175 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 GAGE2DQ9UEU5 116 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 TRAV4A0A0B4J268 109 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 CTSGP08311 255 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 IGLL1P15814 213 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRR20EP86478 221 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRR20CP86479 221 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRR20DP86480 221 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRR20BP86481 221 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PRR20AP86496 221 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 Q6ZSV7 163 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 C9JQL5 133 aa3.29□□□□□ -1.88
VCAN-209ENST00000513016 PLXNA4Q9HCM2 1894 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 A0A1B0GV90 55 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 GNRH2O43555 120 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 IGF1P05019 195 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 DYNAPQ8N1N2 210 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 WI2-2373I1.2A0A1W2PRP0 233 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 hDV102S1A0JD36 115 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 MAP6D1Q9H9H5 199 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 ODF3L1Q8IXM7 274 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 TMEM61Q8N0U2 210 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 UBL5Q9BZL1 73 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 PI4KAP42356 2102 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 SYS1-DBNDD2H3BUS1 97 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 CCL25O15444 150 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 HIST1H4AP62805 103 aaKnown RBP3.28□□□□□ -1.88
VCAN-209ENST00000513016 LINC00479Q96M42 142 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 ANAPC13Q9BS18 74 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 A8MWP6 167 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 GUSBP1Q15486 140 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 SAMD5Q5TGI4 173 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 C11orf52Q96A22 123 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 ODF3Q96PU9 254 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 TRBV7-3A0A075B6L6 115 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 SPRNQ5BIV9 151 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 C9orf47Q6ZRZ4 202 aa3.28□□□□□ -1.88
VCAN-209ENST00000513016 RIF1Q5UIP0 2472 aaKnown RBP3.28□□□□□ -1.89
VCAN-209ENST00000513016 A0A087X0K7 114 aa3.28□□□□□ -1.89
VCAN-209ENST00000513016 ODF3BA8MYP8 253 aa3.28□□□□□ -1.89
VCAN-209ENST00000513016 CXCL1P09341 107 aa3.28□□□□□ -1.89
VCAN-209ENST00000513016 C5orf38Q86SI9 138 aa3.28□□□□□ -1.89
VCAN-209ENST00000513016 FNDC4Q9H6D8 234 aaPredicted RBP3.28□□□□□ -1.89
VCAN-209ENST00000513016 C11orf71Q6IPW1 123 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 KIR2DL5BA0A0G2JN68 375 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 KIR2DL5BA0A0G2JPC4 375 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 P0DMU3 169 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 FAM231AP0DMU4 169 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 FAM231CP0DMU5 169 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 BVES-AS1Q5T3Y7 98 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 KIR2DL5AQ8N109 375 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 MDC1Q14676 2089 aaKnown RBP3.27□□□□□ -1.89
VCAN-209ENST00000513016 FUSP35637 526 aaKnown RBP eCLIP3.27□□□□□ -1.89
VCAN-209ENST00000513016 PSMG3-AS1Q96PY0 264 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 DEFB114Q30KQ6 69 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 UTF1Q5T230 341 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.27□□□□□ -1.89
VCAN-209ENST00000513016 VSIG2Q96IQ7 327 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 TIMM17AQ99595 171 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 SPANXDQ9BXN6 97 aa3.27□□□□□ -1.89
VCAN-209ENST00000513016 KLK12Q9UKR0 248 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms