RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TEX29Q8N6K0 151 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 PLEKHB2Q96CS7 222 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 FANCD2OSQ96PS1 177 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 BUB3O43684 328 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 C20orf78Q9BR46 151 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 CKS1BP61024 79 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 PMVKQ15126 192 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 KIAA1549Q9HCM3 1950 aa6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 ANKHD1Q8IWZ3 2542 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-216ENST00000512820 IGKV3OR2-268A0A0C4DH90 116 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 VWC2LB2RUY7 222 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 K7EMI3 77 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 NDUFA4O00483 81 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 PRO3102Q9H379 93 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 SDHAF1A6NFY7 115 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 PRSS29PA6NIE9 313 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 CRYGBP07316 175 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 RRN3P1Q2M238 152 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 MRPL53Q96EL3 112 aaKnown RBP6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 TEX48A0A1B0GUV7 120 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 GAGE12HA6NDE8 117 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 ZNF80P51504 273 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 TMEM141Q96I45 108 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 ANAPC13Q9BS18 74 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 IGHV1-69DA0A0B4J2H0 117 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 IGHV1-69P01742 117 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 ODF1Q14990 250 aa6.53□□□□□ -1.36
LIMCH1-216ENST00000512820 IGLL5B9A064 214 aa6.52□□□□□ -1.36
LIMCH1-216ENST00000512820 F6UB75 175 aa6.52□□□□□ -1.36
LIMCH1-216ENST00000512820 SPINK8P0C7L1 97 aa6.52□□□□□ -1.36
LIMCH1-216ENST00000512820 COX6B1P14854 86 aa6.52□□□□□ -1.36
LIMCH1-216ENST00000512820 CRIP1P50238 77 aa6.52□□□□□ -1.36
LIMCH1-216ENST00000512820 GNRH2O43555 120 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 IGLV2-11P01706 119 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 NPC2P61916 151 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 Q8N9W7 124 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 HIGD1BQ9P298 99 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 SPXQ9BT56 116 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 AZU1P20160 251 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 YAE1D1Q9NRH1 226 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 LENEPQ9Y5L5 61 aa6.52□□□□□ -1.37
LIMCH1-216ENST00000512820 A0A0U1RRA0 63 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 C9JAW5 83 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 ZNF48Q96MX3 618 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 TRAV8-4A0A0B4J246 113 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 CENPVL3A0A0U1RRI6 287 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 M0R2P5 195 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 TRPT1Q86TN4 253 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 RPL39LQ96EH5 51 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 CHD7Q9P2D1 2997 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 RBX1P62877 108 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 SH2D6Q7Z4S9 175 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 ZFAND6Q6FIF0 208 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 PEMTQ9UBM1 199 aa6.51□□□□□ -1.37
LIMCH1-216ENST00000512820 TRBV20-1A0A075B6N2 111 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 GAGE2BQ13066 116 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 GAGE2EQ4V326 116 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 FOXI2Q6ZQN5 318 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 PIP4P2Q8N4L2 257 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 URB1-AS1Q96HZ7 61 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 TMEM101Q96IK0 257 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 TIMM21Q9BVV7 248 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 GAGE2DQ9UEU5 116 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 KLK9Q9UKQ9 250 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 TSPAN13O95857 204 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 GNLYP22749 145 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 ATXN8Q156A1 80 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 SPINK13Q1W4C9 94 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 NAV3Q8IVL0 2385 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 B4DSR2 109 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 SYNJ2BPP57105 145 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 TRAV12-2A0A075B6T6 113 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 DNAL4O96015 105 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 IGLC6P0CF74 106 aa6.5□□□□□ -1.37
LIMCH1-216ENST00000512820 NOTCH3Q9UM47 2321 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 IGHV7-4-1A0A0J9YVY3 117 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 WFDC2Q14508 124 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 Q8NA96 180 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 PPDPFLQ8WWR9 84 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 TOMM7Q9P0U1 55 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 MSRB2Q9Y3D2 182 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 C5orf42Q9H799 3197 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 LY6G5BQ8NDX9 201 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 ZFP36P26651 326 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 SRSF2Q01130 221 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 C2orf82Q6UX34 121 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 PRO1854Q9UHT4 67 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 OTOGLQ3ZCN5 2332 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 J3QQQ9 107 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 COL4A2P08572 1712 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 BDP1A6H8Y1 2624 aa6.49□□□□□ -1.37
LIMCH1-216ENST00000512820 IGHV1OR15-1A0A075B7D0 117 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 KNCNA6PVL3 124 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 G3V4G9 280 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 I3L3M4 83 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 C9orf47Q6ZRZ4 202 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 C10orf126Q8N4M7 172 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 OR13C6PQ8NH95 151 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 C16orf54Q6UWD8 224 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms