RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TIAM2Q8IVF5 1701 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZCCHC24Q8N2G6 241 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 OR2A1Q8NGT9 310 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZNF563Q8TA94 476 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 FAM57AQ8TBR7 257 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TSKUQ8WUA8 353 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 BRK1Q8WUW1 75 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 H1FXQ92522 213 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 KLK6Q92876 244 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CHCHD1Q96BP2 118 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 ABHD14BQ96IU4 210 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 PGLYRP4Q96LB8 373 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 FAM19A4Q96LR4 140 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 C18orf15Q96N68 181 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TM2D3Q9BRN9 247 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 HDHD3Q9BSH5 251 aaPredicted RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 FAM103A1Q9BTL3 118 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 CHAC1Q9BUX1 264 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 DPH3P1Q9H4G8 78 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 RBM12B-AS1Q9P1G2 102 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 BAZ2BQ9UIF8 2168 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 PLXNA1Q9UIW2 1896 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LY96Q9Y6Y9 160 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ARL2-SNX15V9GYD0 113 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ANKRD36A6QL64 1941 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 NRXN2Q9P2S2 1712 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TRAV40A0A0B4J280 105 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 PIGBOS1A0A0B4J2F0 54 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 UBE2L5PA0A1B0GUS4 154 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 A6NIN4 97 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 C8orf87E5RJ46 101 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 F2Z2F3 143 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 J3QT63 122 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 K7EM74 188 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 UBE2L6O14933 153 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 HCRTO43612 131 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TCL1BO95988 128 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TCRAP04437 139 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ASAH2BP0C7U1 165 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LGALS3P17931 250 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 SSR2P43308 183 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 HIST1H4AP62805 103 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 RPL30P62888 115 aaKnown RBP1.16□□□□□ -2.22
NUP54-208ENST00000508604 ERCC8Q13216 396 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CENPWQ5EE01 88 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TMEM170BQ5T4T1 132 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 EBLN2Q6P2I7 272 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 Q6ZQT7 251 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 C6orf201Q7Z4U5 140 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 KTN1-AS1Q86SY8 53 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 WDR86Q86TI4 376 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 SLC22A24Q8N4F4 322 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 SERP2Q8N6R1 65 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 LRRC29Q8WV35 223 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TMEM158Q8WZ71 300 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZC2HC1AQ96GY0 325 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ODF3Q96PU9 254 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 TRGV9Q99603 122 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 ZNF286AQ9HBT8 521 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 IL36BQ9NZH7 164 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 CKLFQ9UBR5 152 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 V9GY05 133 aa1.16□□□□□ -2.22
NUP54-208ENST00000508604 PTPRDP23468 1912 aa1.15□□□□□ -2.22
NUP54-208ENST00000508604 OBSL1O75147 1896 aa1.15□□□□□ -2.22
NUP54-208ENST00000508604 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.15□□□□□ -2.22
NUP54-208ENST00000508604 CD163L1Q9NR16 1453 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 ANKRD12Q6UB98 2062 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PTPRBP23467 1997 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 SHROOM3Q8TF72 1996 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 TRAV8-1A0A0A6YYK1 113 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 TRBV27A0A0K0K1C4 114 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 A0A1B0GXF2 115 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 hADV29S1A0JD25 119 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PGPA6NDG6 321 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 J3QRE1 110 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 M0R129 80 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 UPK2O00526 184 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 CCL16O15467 120 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 BCE1O60756 84 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 SS18L1O75177 396 aaPredicted RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 LEPROTL1O95214 131 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A14O95258 325 aaPredicted RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 IL4P05112 153 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PEBP1P30086 187 aaKnown RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 DSCR4P56555 118 aaPredicted RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 UBE2D3P61077 147 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 UBE2D2P62837 147 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 CCL20P78556 96 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 ZNF117Q03924 483 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 ADIGQ0VDE8 80 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 RSPO1Q2MKA7 263 aaPredicted RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 SP6Q3SY56 376 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 TMEM155Q4W5P6 130 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 DEFB121Q5J5C9 76 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 SDIM1Q6ZPB5 146 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PHF5AQ7RTV0 110 aaKnown RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 C5orf38Q86SI9 138 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 LINC00643Q86TS7 51 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PDPNQ86YL7 162 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PCP2Q8IVA1 136 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms