RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NBEAP1P0C6P0 100 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 HIST1H1BP16401 226 aaKnown RBP0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 ADCYAP1P18509 176 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 OR8B8Q15620 311 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 IQCJQ1A5X6 159 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 MRPL40Q9NQ50 206 aaKnown RBP0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 CALML5Q9NZT1 146 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 A0A1B0GX51 115 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 PAEPP09466 180 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 SDC4P31431 198 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 Q5XG85 94 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 UNQ5815/PRO19632Q6UWF5 114 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 NAV3Q8IVL0 2385 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 KNTC1P50748 2209 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 CDK12Q9NYV4 1490 aaPredicted RBP0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 KIAA1549LQ6ZVL6 1849 aa0.48□□□□□ -2.33
HMGB1P28-201ENST00000507778 PTPRGP23470 1445 aa0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 POLR2JP52435 117 aaKnown RBP0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 RPL37P61927 97 aaKnown RBP0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 TAC4Q86UU9 113 aa0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 NUP210Q8TEM1 1887 aaPredicted RBP0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 ARHGAP31Q2M1Z3 1444 aa0.47□□□□□ -2.33
HMGB1P28-201ENST00000507778 DEGS1O15121 323 aa0.46□□□□□ -2.34
HMGB1P28-201ENST00000507778 MT-ND4LP03901 98 aa0.46□□□□□ -2.34
HMGB1P28-201ENST00000507778 TSKUQ8WUA8 353 aa0.46□□□□□ -2.34
HMGB1P28-201ENST00000507778 SLC35B3Q9H1N7 401 aa0.46□□□□□ -2.34
HMGB1P28-201ENST00000507778 WDR97A6NE52 1622 aa0.46□□□□□ -2.34
HMGB1P28-201ENST00000507778 SCTP09683 121 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 CMPK1P30085 196 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 PLGLB1Q02325 96 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 KLKP1Q107X0 134 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 TMEM91Q6ZNR0 172 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 TCTE3Q8IZS6 198 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 BANF2Q9H503 90 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 SPANXA1Q9NS26 97 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 SPANXCQ9NY87 97 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 ZCCHC6Q5VYS8 1495 aaKnown RBP0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 FRAS1Q86XX4 4008 aa0.45□□□□□ -2.34
HMGB1P28-201ENST00000507778 ARAP1Q96P48 1450 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 TRBV10-1A0A0K0K1A3 114 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 SMIM24O75264 130 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 TNFSF15O95150 251 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 CD3DP04234 171 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 CCKP06307 115 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 KRTAP2-3P0C7H8 128 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 MAGOHBQ96A72 148 aaKnown RBP0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 KRTAP2-4Q9BYR9 128 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 KRTAP2-1Q9BYU5 128 aa0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 SYNE2Q8WXH0 6885 aaKnown RBP0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.44□□□□□ -2.34
HMGB1P28-201ENST00000507778 TRAV17A0A0B4J275 112 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 C9JAW5 83 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 CCDC153Q494R4 210 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 TMEM244Q5VVB8 128 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 PPDPFLQ8WWR9 84 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 TMEM14BQ9NUH8 114 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 TAS2R8Q9NYW2 309 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 HIGD1AQ9Y241 93 aa0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 BLMP54132 1417 aaPredicted RBP0.43□□□□□ -2.34
HMGB1P28-201ENST00000507778 MUC5ACP98088 5654 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 CACNA1EQ15878 2313 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 KDM5CP41229 1560 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 BORCS7-ASMTA0A0B4J1R7 106 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 A0A1B0GW64 132 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 HLA-DRB4P13762 266 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 AKR1D1P51857 326 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 DNAJC15Q9Y5T4 150 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 HLA-DRB4X5D2U9 266 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 FSIP2Q5CZC0 6907 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 CPDO75976 1380 aa0.42□□□□□ -2.34
HMGB1P28-201ENST00000507778 USP24Q9UPU5 2620 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 OR2H2O95918 312 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 APOC1P02654 83 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 DR1Q01658 176 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 SLC25A26Q70HW3 274 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 VPS25Q9BRG1 176 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 ANK1P16157 1881 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 TANC2Q9HCD6 1990 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 BCORL1Q5H9F3 1711 aa0.41□□□□□ -2.34
HMGB1P28-201ENST00000507778 CCDC171Q6TFL3 1326 aa0.4□□□□□ -2.34
HMGB1P28-201ENST00000507778 TRAV2A0A0B4J234 112 aa0.4□□□□□ -2.35
HMGB1P28-201ENST00000507778 RBP4P02753 201 aa0.4□□□□□ -2.35
HMGB1P28-201ENST00000507778 DBIP07108 87 aaKnown RBP0.4□□□□□ -2.35
HMGB1P28-201ENST00000507778 AIF1LQ9BQI0 150 aa0.4□□□□□ -2.35
HMGB1P28-201ENST00000507778 ANKRD30AQ9BXX3 1397 aa0.4□□□□□ -2.35
HMGB1P28-201ENST00000507778 FER1L6Q2WGJ9 1857 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 LRP5O75197 1615 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 A0A096LNT2 108 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 TEX49A0A1B0GTD5 131 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 CXorf51AA0A1B0GTR3 108 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 AKAP14Q86UN6 197 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 SNX29P2Q8IUI4 249 aa0.39□□□□□ -2.35
HMGB1P28-201ENST00000507778 YPEL1O60688 119 aa0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 MPC1LP0DKB6 136 aa0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 SCGB1A1P11684 91 aa0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 PYDC1Q8WXC3 89 aa0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 DSCR8Q96T75 97 aa0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 NOP16Q9Y3C1 178 aaKnown RBP0.38□□□□□ -2.35
HMGB1P28-201ENST00000507778 ASH1LQ9NR48 2969 aaKnown RBP0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms