RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 IGLC2P0DOY2 106 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 IGLC3P0DOY3 106 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 CTSZQ9UBR2 303 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 HCFC1P51610 2035 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 DOT1LQ8TEK3 1739 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 EBI3Q14213 229 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 SCRT1Q9BWW7 348 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 SIRPDQ9H106 197 aa4.64□□□□□ -1.67
USF3-204ENST00000496826 IGHV3OR16-10A0A075B7F0 116 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 TRBV6-7A0A0A0MS04 114 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 IGHV1-45A0A0A0MS14 117 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 QRFPP83859 136 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 SCXQ7RTU7 201 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 FAM110DQ8TAY7 271 aaPredicted RBP4.63□□□□□ -1.67
USF3-204ENST00000496826 AGRNO00468 2067 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 A0A0J9YY99 117 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 MT-ATP8P03928 68 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 CTSGP08311 255 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 IGLV3-32A0A0A0MS00 114 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 MUC21A0A140T8X8 626 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 IGHV3-48P01763 117 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 IGLL1P15814 213 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 CDCP2Q5VXM1 449 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 FHL2Q14192 279 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 TUBGCP6Q96RT7 1819 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 NALCNQ8IZF0 1738 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 CSRP2Q16527 193 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 MRPL51Q4U2R6 128 aaKnown RBP4.63□□□□□ -1.67
USF3-204ENST00000496826 APRG1Q8IVJ8 170 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 DKK1O94907 266 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 PRB2P02812 416 aaPredicted RBP4.63□□□□□ -1.67
USF3-204ENST00000496826 TMEM92Q6UXU6 159 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 WFDC10BQ8IUB3 73 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 ZNF702PQ9H963 129 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 TRBV10-1A0A0K0K1A3 114 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 A6NDX4 124 aa4.63□□□□□ -1.67
USF3-204ENST00000496826 UBR1Q8IWV7 1749 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 IGHV1OR15-9A0A0B4J2B8 117 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 MSMBP08118 114 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 CSRP1P21291 193 aaKnown RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 MIAQ16674 131 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 ZNF501Q96CX3 271 aaPredicted RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 DKK2Q9UBU2 259 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 IGKV3D-7A0A0C4DH55 119 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 P0DMU3 169 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 FAM231AP0DMU4 169 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 FAM231CP0DMU5 169 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 FAM27E3Q08E93 113 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 IGHV5-51A0A0C4DH38 117 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 ZNF73O43830 326 aaPredicted RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 CTGFP29279 349 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 SLURP1P55000 103 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 KTN1-AS1Q86SY8 53 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 SHANK2-AS3Q9BTD1 123 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 USP54Q70EL1 1684 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 A0A087WWL8 130 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 C2CD4DB7Z1M9 353 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 CXCL3P19876 107 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 RNASE8Q8TDE3 154 aaKnown RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 FAM201AQ5SY85 155 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 TP53AIP1Q9HCN2 124 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 FAM208AQ9UK61 1670 aaKnown RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 IGKV2-40A0A087WW87 121 aaPredicted RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 IGKV2D-40P01614 121 aaPredicted RBP4.62□□□□□ -1.67
USF3-204ENST00000496826 H2BFSP57053 126 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 MORN2Q502X0 79 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 C11orf52Q96A22 123 aa4.62□□□□□ -1.67
USF3-204ENST00000496826 LYPD3O95274 346 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 IGKV6-21A0A0C4DH24 114 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 IGKV1-39P01597 117 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 IGKV1D-39P04432 117 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 C5orf66Q9H5L9 145 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 ABCA2Q9BZC7 2435 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 A0A0J9YXY3 114 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 X6R8D5 127 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 TMEM223A0PJW6 202 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 FAM19A1Q7Z5A9 133 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 RPP25LQ8N5L8 163 aaKnown RBP4.61□□□□□ -1.67
USF3-204ENST00000496826 ZNF525Q8N782 197 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 SAP25Q8TEE9 199 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 REG4Q9BYZ8 158 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 COL11A1P12107 1806 aaPredicted RBP4.61□□□□□ -1.67
USF3-204ENST00000496826 TANC2Q9HCD6 1990 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 RPS27P42677 84 aaKnown RBP4.61□□□□□ -1.67
USF3-204ENST00000496826 SRSF3P84103 164 aaKnown RBP4.61□□□□□ -1.67
USF3-204ENST00000496826 RPL39P5Q59GN2 51 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 NOP10Q9NPE3 64 aaKnown RBP4.61□□□□□ -1.67
USF3-204ENST00000496826 IGKV1-9A0A0C4DH69 117 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 TRBV27A0A0K0K1C4 114 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 IGHV4-38-2P0DP08 117 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 REG3GQ6UW15 175 aa4.61□□□□□ -1.67
USF3-204ENST00000496826 TMEM89A2RUT3 159 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 PIFOQ8TCI5 191 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 ALKQ9UM73 1620 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 MDKP21741 143 aaPredicted RBP4.6□□□□□ -1.67
USF3-204ENST00000496826 CCDC179H3BU77 68 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 IGHV2-5P01817 119 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 PRB3Q04118 309 aaPredicted RBP4.6□□□□□ -1.67
USF3-204ENST00000496826 ZNF497Q6ZNH5 498 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 LINC01560Q8TB33 94 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms