RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RYR3Q15413 4870 aa11.61□□□□□ -0.55
SF3A1-209ENST00000496189 TRGV11A0A075B6L2 103 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 TRGV2A0A075B6R0 118 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 SCO2A0A1W2PP80 73 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GAGE12BA1L429 117 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GAGE7O76087 117 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GAGE12FP0CL80 117 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GAGE12GP0CL81 117 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GAGE12IP0CL82 117 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 TEX261Q6UWH6 196 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 KCNS1Q96KK3 526 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 C8orf49Q96NF6 230 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 GSN-AS1Q9NRJ2 163 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 NAGKQ9UJ70 344 aa11.6□□□□□ -0.55
SF3A1-209ENST00000496189 PLECQ15149 4684 aaKnown RBP11.6□□□□□ -0.55
SF3A1-209ENST00000496189 PFN1P07737 140 aaKnown RBP11.59□□□□□ -0.55
SF3A1-209ENST00000496189 MUC21Q5SSG8 566 aa11.59□□□□□ -0.55
SF3A1-209ENST00000496189 TMEM88Q6PEY1 159 aa11.59□□□□□ -0.55
SF3A1-209ENST00000496189 UBE2DNLQ8IWF7 75 aa11.59□□□□□ -0.55
SF3A1-209ENST00000496189 TRGV1A0A0A0MS02 117 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 LTAP01374 205 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 TCL1AP56279 114 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 TDRG1Q3Y452 100 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 LYPD6BQ8NI32 183 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 C11orf52Q96A22 123 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 SDF2L1Q9HCN8 221 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 RYR2Q92736 4967 aa11.58□□□□□ -0.56
SF3A1-209ENST00000496189 FABP5P3A8MUU1 101 aa11.57□□□□□ -0.56
SF3A1-209ENST00000496189 OR5I1Q13606 314 aa11.57□□□□□ -0.56
SF3A1-209ENST00000496189 Q6ZQT7 251 aa11.57□□□□□ -0.56
SF3A1-209ENST00000496189 TMEM183AQ8IXX5 376 aa11.57□□□□□ -0.56
SF3A1-209ENST00000496189 C11orf72Q8NBR9 251 aa11.57□□□□□ -0.56
SF3A1-209ENST00000496189 RBFOX3A6NFN3 312 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 RPL35P42766 123 aaKnown RBP11.56□□□□□ -0.56
SF3A1-209ENST00000496189 ZNF80P51504 273 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-209ENST00000496189 Q6ZTI0 123 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 COX8CQ7Z4L0 72 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 BAGE2Q86Y30 109 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 LINC00612Q8N6U2 182 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 SPXQ9BT56 116 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 MED9Q9NWA0 146 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 TP53TG3Q9ULZ0 132 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 SACSQ9NZJ4 4579 aa11.56□□□□□ -0.56
SF3A1-209ENST00000496189 NUDT3O95989 172 aa11.55□□□□□ -0.56
SF3A1-209ENST00000496189 LGALS9BQ3B8N2 356 aa11.55□□□□□ -0.56
SF3A1-209ENST00000496189 FAM162BQ5T6X4 162 aa11.55□□□□□ -0.56
SF3A1-209ENST00000496189 SPINK4O60575 86 aa11.54□□□□□ -0.56
SF3A1-209ENST00000496189 POM121L12Q8N7R1 296 aa11.54□□□□□ -0.56
SF3A1-209ENST00000496189 ZC2HC1AQ96GY0 325 aa11.54□□□□□ -0.56
SF3A1-209ENST00000496189 EIF5A2Q9GZV4 153 aaKnown RBP11.54□□□□□ -0.56
SF3A1-209ENST00000496189 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
SF3A1-209ENST00000496189 C18orf15Q96N68 181 aa11.53□□□□□ -0.56
SF3A1-209ENST00000496189 TMEM250H0YL14 139 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 GNRH2O43555 120 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 ORM1P02763 201 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 TYMSP04818 313 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 GNG4P50150 75 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 RAB14P61106 215 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 RNF212Q495C1 297 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 NHLRC2Q8NBF2 726 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 SMIM12Q96EX1 92 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 MRPL16Q9NX20 251 aaKnown RBP11.52□□□□□ -0.57
SF3A1-209ENST00000496189 MDFICQ9P1T7 246 aa11.52□□□□□ -0.57
SF3A1-209ENST00000496189 DNAH1Q9P2D7 4330 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 TRAV26-1A0A087WT03 109 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 IGHV3-16A0A0C4DH30 117 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 SH2D1AO60880 128 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 NDUFS6O75380 124 aaKnown RBP11.51□□□□□ -0.57
SF3A1-209ENST00000496189 ZNF674Q2M3X9 581 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 CENPWQ5EE01 88 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 TOR2AQ5JU69 321 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 FAM210AQ96ND0 272 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 DERL1Q9BUN8 251 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 MLST8Q9BVC4 326 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 BIN3Q9NQY0 253 aa11.51□□□□□ -0.57
SF3A1-209ENST00000496189 B4DEV8 164 aa11.5□□□□□ -0.57
SF3A1-209ENST00000496189 S100A4P26447 101 aaKnown RBP11.5□□□□□ -0.57
SF3A1-209ENST00000496189 CRIP1P50238 77 aa11.5□□□□□ -0.57
SF3A1-209ENST00000496189 CCL18P55774 89 aa11.5□□□□□ -0.57
SF3A1-209ENST00000496189 SLAQ13239 276 aa11.5□□□□□ -0.57
SF3A1-209ENST00000496189 C11orf21Q9P2W6 132 aa11.5□□□□□ -0.57
SF3A1-209ENST00000496189 A0A0J9YY99 117 aa11.49□□□□□ -0.57
SF3A1-209ENST00000496189 H3BNG1 76 aa11.49□□□□□ -0.57
SF3A1-209ENST00000496189 M0R2P5 195 aa11.49□□□□□ -0.57
SF3A1-209ENST00000496189 MGST1P10620 155 aaKnown RBP11.49□□□□□ -0.57
SF3A1-209ENST00000496189 ASIPP42127 132 aa11.49□□□□□ -0.57
SF3A1-209ENST00000496189 FAM3BP58499 235 aaPredicted RBP11.49□□□□□ -0.57
SF3A1-209ENST00000496189 DAZAP1Q96EP5 407 aaKnown RBP11.49□□□□□ -0.57
SF3A1-209ENST00000496189 HYDINQ4G0P3 5121 aa11.48□□□□□ -0.57
SF3A1-209ENST00000496189 IGKV3D-20A0A0C4DH25 116 aa11.48□□□□□ -0.57
SF3A1-209ENST00000496189 RAB19A4D1S5 217 aa11.48□□□□□ -0.57
SF3A1-209ENST00000496189 KRBOX1C9JBD0 128 aa11.48□□□□□ -0.57
SF3A1-209ENST00000496189 PRR27Q6MZM9 219 aa11.48□□□□□ -0.57
SF3A1-209ENST00000496189 PCNPQ8WW12 178 aaKnown RBP11.48□□□□□ -0.57
SF3A1-209ENST00000496189 TRGV4A0A0C4DH28 118 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 M0R036 132 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 IGHV3-53P01767 116 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 HOXA5P20719 270 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 CEBPGP53567 150 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 LINC01559Q495D7 138 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms