RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MAP1LC3CQ9BXW4 147 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 MS4A6AQ9H2W1 248 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 TRAV9-2A0A087WT02 112 aa15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 H3BVH4 76 aa15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 LGALS9O00182 355 aa15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 GAS8-AS1O95177 125 aa15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 C2orf88Q9BSF0 95 aa15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 TIMM8BQ9Y5J9 83 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-208ENST00000492980 CACNG7P62955 275 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 KIR3DS1Q14943 382 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 LBHQ53QV2 105 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 SNHG12Q9BXW3 62 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 TCF21O43680 179 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 EVI2AP22794 236 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 HOXD3P31249 432 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 RNASE4P34096 147 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 ZNF747Q9BV97 191 aa15.86■□□□□ 0.13
CCDC88B-208ENST00000492980 DOPEY2Q9Y3R5 2298 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 C20orf202A1L168 122 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 OR4C46A6NHA9 309 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 IGLC3P0DOY3 106 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 PLA2G2AP14555 144 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 PET117Q6UWS5 81 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 LAMTOR2Q9Y2Q5 125 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 SPANXN1Q5VSR9 72 aa15.85■□□□□ 0.13
CCDC88B-208ENST00000492980 ZNF469Q96JG9 3925 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-208ENST00000492980 ANXA2RQ3ZCQ2 193 aa15.84■□□□□ 0.13
CCDC88B-208ENST00000492980 KLHDC1Q8N7A1 406 aa15.84■□□□□ 0.13
CCDC88B-208ENST00000492980 MAP1LC3AQ9H492 121 aa15.84■□□□□ 0.13
CCDC88B-208ENST00000492980 M0R143 59 aa15.83■□□□□ 0.13
CCDC88B-208ENST00000492980 TFPI2P48307 235 aa15.83■□□□□ 0.13
CCDC88B-208ENST00000492980 SMIM15Q7Z3B0 74 aa15.83■□□□□ 0.13
CCDC88B-208ENST00000492980 UQCR10Q9UDW1 63 aa15.83■□□□□ 0.13
CCDC88B-208ENST00000492980 TNFRSF6BO95407 300 aa15.83■□□□□ 0.12
CCDC88B-208ENST00000492980 ITPR3Q14573 2671 aa15.83■□□□□ 0.12
CCDC88B-208ENST00000492980 KLLNB2CW77 178 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 IGLL1P15814 213 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 GATA1P15976 413 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 K7EQG2 157 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 ZNF688P0C7X2 276 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 ASIPP42127 132 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 C18orf65Q6ZTR6 163 aa15.82■□□□□ 0.12
CCDC88B-208ENST00000492980 LINC01546A6NGU7 62 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 J3QKU1 62 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 PSMG4Q5JS54 123 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 MRPL52Q86TS9 123 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 LURAP1LQ8IV03 231 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 TMEM86BQ8N661 226 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 MCRIP2Q9BUT9 160 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 CHD6Q8TD26 2715 aa15.81■□□□□ 0.12
CCDC88B-208ENST00000492980 H0Y8G0 127 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 HBDP02042 147 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 LINC01545Q5VT33 79 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 A0A1B0GV90 55 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 MED14OSP0DP75 135 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 FXYD7P58549 80 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 TEX29Q8N6K0 151 aa15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 KMT2BQ9UMN6 2715 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-208ENST00000492980 S100A4P26447 101 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 SNRPD3P62318 126 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 DEFB136Q30KP8 78 aa15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 SCRT2Q9NQ03 307 aa15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 GNRH2O43555 120 aa15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 OR2K2Q8NGT1 345 aa15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 NXT2Q9NPJ8 142 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-208ENST00000492980 SPRY2O43597 315 aa15.78■□□□□ 0.12
CCDC88B-208ENST00000492980 SLURP1P55000 103 aa15.78■□□□□ 0.12
CCDC88B-208ENST00000492980 ADAMTSL5Q6ZMM2 481 aa15.78■□□□□ 0.12
CCDC88B-208ENST00000492980 NRACQ8N912 160 aa15.78■□□□□ 0.12
CCDC88B-208ENST00000492980 A0A0J9YX75 114 aa15.77■□□□□ 0.12
CCDC88B-208ENST00000492980 M0R381 172 aa15.77■□□□□ 0.12
CCDC88B-208ENST00000492980 Q6ZN92 141 aa15.77■□□□□ 0.12
CCDC88B-208ENST00000492980 WFDC12Q8WWY7 111 aa15.77■□□□□ 0.12
CCDC88B-208ENST00000492980 ODF3Q96PU9 254 aa15.77■□□□□ 0.12
CCDC88B-208ENST00000492980 TRAV26-2A0A0B4J265 109 aa15.77■□□□□ 0.11
CCDC88B-208ENST00000492980 hDV102S1A0JD36 115 aa15.77■□□□□ 0.11
CCDC88B-208ENST00000492980 RNASE3P12724 160 aaKnown RBP15.77■□□□□ 0.11
CCDC88B-208ENST00000492980 TCTEX1D4Q5JR98 221 aa15.77■□□□□ 0.11
CCDC88B-208ENST00000492980 PHLDA3Q9Y5J5 127 aa15.77■□□□□ 0.11
CCDC88B-208ENST00000492980 PMCHL2Q9BQD1 86 aa15.76■□□□□ 0.11
CCDC88B-208ENST00000492980 IGLV2-18A0A075B6J9 118 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 DNAJC9-AS1A6NH13 148 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 LEPP41159 167 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 Q8N8P6 123 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 C4orf3Q8WVX3 66 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 ST20Q9HBF5 79 aa15.75■□□□□ 0.11
CCDC88B-208ENST00000492980 PRSS47A8MTI9 375 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 LINC01619G3V211 115 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 HNRNPA3P51991 378 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 Q6ZSV7 163 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 DEFB125Q8N687 156 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 MRAP2Q96G30 205 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 KRTAP1-1Q07627 177 aa15.74■□□□□ 0.11
CCDC88B-208ENST00000492980 C7orf71A4D174 169 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 FAM159AQ6UWV7 190 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 OR11H1Q8NG94 326 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 TRAV12-3A0A0B4J271 114 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 FCER1GP30273 86 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 PDZD2O15018 2839 aa15.73■□□□□ 0.11
CCDC88B-208ENST00000492980 TLN2Q9Y4G6 2542 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms